Variant report
| Variant | rs17175174 |
|---|---|
| Chromosome Location | chr12:49285634-49285635 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000174243 | Chromatin interaction |
| ENSG00000172602 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs10783288 | 1.00[JPT][hapmap] |
| rs10875884 | 1.00[JPT][hapmap] |
| rs11547436 | 0.80[EUR][1000 genomes] |
| rs11831294 | 0.80[EUR][1000 genomes] |
| rs2228417 | 1.00[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes] |
| rs2453477 | 1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs57040947 | 0.84[EUR][1000 genomes] |
| rs58829932 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs58861845 | 0.90[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs7959831 | 1.00[CHD][hapmap] |
| rs833477 | 1.00[JPT][hapmap] |
| rs833480 | 1.00[JPT][hapmap] |
| rs833482 | 1.00[JPT][hapmap] |
| rs833836 | 1.00[CHD][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832404 | chr12:49258560-49458555 | Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 87 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
