Variant report

Variant	rs10877378
Chromosome Location	chr12:60390320-60390321
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10784017	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10877376	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10877387	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11173235	0.84[ASN][1000 genomes]
rs11173300	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35898855	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4132660	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4480575	0.94[ASN][1000 genomes]
rs4525272	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7301335	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs73106135	0.83[AMR][1000 genomes]
rs73119606	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs73121599	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7970962	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869425	chr12:59746898-60479741	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv516042	chr12:60354307-60459370	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv899136	chr12:60373244-60483607	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv559103	chr12:60383069-60483607	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60377400-60403800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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