Variant report
| Variant | rs7970962 |
|---|---|
| Chromosome Location | chr12:60373514-60373515 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10784012 | 0.82[ASN][1000 genomes] |
| rs10784017 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10877366 | 0.83[ASN][1000 genomes] |
| rs10877376 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10877378 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs10877387 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11173232 | 0.81[ASN][1000 genomes] |
| rs11173234 | 0.81[ASN][1000 genomes] |
| rs11173300 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12231000 | 0.82[ASN][1000 genomes] |
| rs12426916 | 0.81[ASN][1000 genomes] |
| rs12578830 | 0.81[ASN][1000 genomes] |
| rs35898855 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs4132660 | 0.84[AMR][1000 genomes] |
| rs4326838 | 0.81[ASN][1000 genomes] |
| rs4415809 | 0.81[ASN][1000 genomes] |
| rs4469929 | 0.82[ASN][1000 genomes] |
| rs4525272 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4603345 | 0.81[ASN][1000 genomes] |
| rs4630332 | 0.82[ASN][1000 genomes] |
| rs4635120 | 0.82[ASN][1000 genomes] |
| rs7301335 | 0.82[AMR][1000 genomes] |
| rs7302440 | 0.98[AFR][1000 genomes];0.96[ASN][1000 genomes] |
| rs73106135 | 0.85[ASN][1000 genomes] |
| rs73121599 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7957469 | 0.82[ASN][1000 genomes] |
| rs7961087 | 0.81[ASN][1000 genomes] |
| rs7971243 | 0.84[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869425 | chr12:59746898-60479741 | Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
| 2 | nsv516042 | chr12:60354307-60459370 | Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv899136 | chr12:60373244-60483607 | Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:60368200-60373600 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
| 2 | chr12:60368400-60376600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
