Variant report
| Variant | rs10877742 |
|---|---|
| Chromosome Location | chr12:40288790-40288791 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10877767 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.83[EUR][1000 genomes] |
| rs10877823 | 0.81[JPT][hapmap] |
| rs10877832 | 0.81[JPT][hapmap] |
| rs10877836 | 0.81[JPT][hapmap] |
| rs10877840 | 0.81[JPT][hapmap] |
| rs11173669 | 0.81[CHB][hapmap] |
| rs11173704 | 0.81[CHB][hapmap] |
| rs11173979 | 0.81[CHB][hapmap] |
| rs11174281 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs11174315 | 0.81[JPT][hapmap] |
| rs11174338 | 0.81[JPT][hapmap] |
| rs11174351 | 0.81[JPT][hapmap] |
| rs11174374 | 0.81[JPT][hapmap] |
| rs11559994 | 0.81[JPT][hapmap] |
| rs11564285 | 0.81[JPT][hapmap] |
| rs12230558 | 0.81[JPT][hapmap] |
| rs28370600 | 0.81[JPT][hapmap] |
| rs61931259 | 0.84[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7297783 | 0.81[JPT][hapmap] |
| rs7305863 | 0.81[JPT][hapmap] |
| rs7312341 | 0.81[JPT][hapmap] |
| rs7316296 | 0.81[JPT][hapmap] |
| rs7959014 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs7970063 | 0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap] |
| rs7973509 | 0.81[JPT][hapmap] |
| rs7974169 | 0.81[JPT][hapmap] |
| rs7977137 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv899025 | chr12:40191778-40321846 | ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv1049214 | chr12:40197549-40326495 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv1046428 | chr12:40226283-40439843 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv541481 | chr12:40226283-40439843 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
| 5 | nsv899026 | chr12:40279428-40302581 | Weak transcription Enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| 6 | nsv558593 | chr12:40279428-40317017 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | inside rSNPs | n/a |
| 7 | nsv522471 | chr12:40284666-40288790 | Weak transcription Enhancers | n/a | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:40285000-40289000 | Enhancers | Liver | Liver |
