Variant report

Variant	rs10877809
Chromosome Location	chr12:62587572-62587573
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10219761	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10877807	0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs10877808	0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs10877812	0.90[JPT][hapmap]
rs10877816	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11174363	0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs11174365	0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs11174376	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11174379	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11174384	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11174386	0.89[ASN][1000 genomes]
rs11174388	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11174390	0.88[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12227228	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12312235	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12319281	0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs12582117	0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs1320937	0.90[JPT][hapmap]
rs1907971	0.91[JPT][hapmap]
rs2279563	0.80[ASN][1000 genomes]
rs35727424	0.86[ASN][1000 genomes]
rs4280050	0.89[ASN][1000 genomes]
rs67753559	0.89[ASN][1000 genomes]
rs7138634	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7300029	0.90[ASN][1000 genomes]
rs7307385	0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs7312872	0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs7314903	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7314968	0.88[CEU][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832435	chr12:62407000-62601835	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62586600-62588400	Enhancers	Liver	Liver
2	chr12:62586600-62589200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr12:62586800-62588800	Enhancers	HepG2	liver
4	chr12:62587000-62588200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr12:62587000-62588400	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr12:62587000-62588600	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr12:62587000-62588600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr12:62587000-62589000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr12:62587000-62589200	Enhancers	NHEK	skin
10	chr12:62587000-62589400	Enhancers	HMEC	breast
11	chr12:62587200-62587600	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr12:62587200-62588600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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