Variant report

Variant	rs10877892
Chromosome Location	chr12:63010358-63010359
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:62995535..62997694-chr12:63008997..63010618,2	MCF-7	breast:
2	chr12:63009218..63011056-chr12:63012566..63014698,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MON2-2	chr12:62997216-63015942	NONHSAT029092

Variant related genes	Relation type
ENSG00000199179	Chromatin interaction
ENSG00000221949	Chromatin interaction
ENSG00000257354	Chromatin interaction

rs_ID	r²[population]
rs10877903	1.00[JPT][hapmap]
rs11174503	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs11174531	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs11174549	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs11174554	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs11174560	0.98[ASN][1000 genomes]
rs11174561	0.82[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11174566	0.98[ASN][1000 genomes]
rs11174567	0.90[ASN][1000 genomes]
rs11174592	0.82[JPT][hapmap]
rs12161814	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs12228446	0.82[JPT][hapmap]
rs12229932	0.85[JPT][hapmap]
rs3825305	0.85[JPT][hapmap]
rs4405369	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs4494347	0.98[ASN][1000 genomes]

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62997800-63012800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr12:62997800-63019200	Weak transcription	Spleen	Spleen
3	chr12:62998000-63019200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr12:62998800-63012800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr12:62999000-63019200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr12:62999200-63012200	Weak transcription	Fetal Thymus	thymus
7	chr12:62999200-63013200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr12:62999400-63010800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr12:62999400-63012000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr12:62999400-63025000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr12:62999600-63011600	Weak transcription	Fetal Stomach	stomach
12	chr12:62999600-63012800	Weak transcription	Primary hematopoietic stem cells	blood
13	chr12:62999800-63012600	Weak transcription	Brain Hippocampus Middle	brain
14	chr12:62999800-63013400	Weak transcription	Primary B cells from cord blood	blood
15	chr12:63000000-63012400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr12:63000000-63019000	Weak transcription	Adipose Nuclei	Adipose
17	chr12:63000200-63012400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr12:63000200-63013000	Weak transcription	NHLF	lung
19	chr12:63000200-63015000	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr12:63000200-63020600	Weak transcription	HMEC	breast
21	chr12:63000600-63019200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr12:63000800-63011200	Weak transcription	Aorta	Aorta
23	chr12:63000800-63014600	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr12:63000800-63024200	Weak transcription	Fetal Brain Female	brain
25	chr12:63001000-63019400	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr12:63001200-63011400	Weak transcription	HUVEC	blood vessel
27	chr12:63003200-63023800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr12:63003800-63011200	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr12:63004800-63014600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr12:63005000-63017600	Weak transcription	Left Ventricle	heart
31	chr12:63005000-63019000	Weak transcription	Placenta	Placenta
32	chr12:63006000-63011400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr12:63006200-63012200	Weak transcription	Fetal Intestine Small	intestine
34	chr12:63006200-63017600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr12:63007800-63024800	Weak transcription	NH-A	brain
36	chr12:63008000-63023600	Weak transcription	NHDF-Ad	bronchial
37	chr12:63008600-63010400	Strong transcription	HSMM	muscle
38	chr12:63009000-63011200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr12:63009400-63010600	Genic enhancers	Osteobl	bone
40	chr12:63009400-63012600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr12:63009600-63010400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr12:63009600-63010600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr12:63009600-63014800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr12:63009800-63010400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr12:63009800-63010600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr12:63009800-63010600	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr12:63009800-63010600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr12:63009800-63010600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr12:63009800-63010600	Strong transcription	Fetal Muscle Leg	muscle
50	chr12:63010000-63011400	Strong transcription	Brain Germinal Matrix	brain

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