Variant report

Variant	rs10877903
Chromosome Location	chr12:63047232-63047233
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:63038732..63045047-chr12:63045521..63050769,8	MCF-7	breast:
2	chr12:63045607..63047672-chr12:63047992..63050853,2	MCF-7	breast:
3	chr12:63045714..63050618-chr12:63051733..63055030,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000241941	Chromatin interaction
ENSG00000238475	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10877892	1.00[JPT][hapmap]
rs11174503	0.82[JPT][hapmap]
rs11174531	0.82[JPT][hapmap]
rs11174549	0.82[JPT][hapmap]
rs11174554	0.82[JPT][hapmap]
rs11174561	1.00[JPT][hapmap]
rs11174592	1.00[CEU][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes]
rs12161814	0.82[JPT][hapmap]
rs12229932	0.85[JPT][hapmap]
rs3825305	0.85[JPT][hapmap]
rs4405369	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv741	chr12:63038255-63064846	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63026600-63049800	Weak transcription	Right Atrium	heart
2	chr12:63035000-63048000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr12:63035200-63048400	Weak transcription	Fetal Muscle Leg	muscle
4	chr12:63035200-63069800	Weak transcription	Left Ventricle	heart
5	chr12:63037200-63050800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr12:63037200-63069600	Weak transcription	Fetal Intestine Large	intestine
7	chr12:63039200-63070000	Weak transcription	Pancreas	Pancrea
8	chr12:63041400-63049800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr12:63041600-63047600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr12:63041600-63047600	Weak transcription	Lung	lung
11	chr12:63041600-63049400	Weak transcription	Brain Angular Gyrus	brain
12	chr12:63041600-63049800	Weak transcription	Fetal Stomach	stomach
13	chr12:63041600-63053600	Weak transcription	Osteobl	bone
14	chr12:63041800-63048600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr12:63042000-63047400	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr12:63042000-63047400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr12:63042000-63049600	Weak transcription	Brain Cingulate Gyrus	brain
18	chr12:63042200-63050400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr12:63042400-63047400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr12:63042400-63047800	Weak transcription	Fetal Muscle Trunk	muscle
21	chr12:63042400-63048000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr12:63042400-63048600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr12:63042400-63049200	Weak transcription	Brain Hippocampus Middle	brain
24	chr12:63042400-63049400	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr12:63042400-63049400	Weak transcription	Ovary	ovary
26	chr12:63042600-63047600	Weak transcription	Fetal Intestine Small	intestine
27	chr12:63042600-63047800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr12:63042600-63048200	Weak transcription	Gastric	stomach
29	chr12:63042800-63048200	Weak transcription	Thymus	Thymus
30	chr12:63043200-63047600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr12:63043400-63048200	Weak transcription	HepG2	liver
32	chr12:63044800-63050200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
33	chr12:63045000-63053400	Weak transcription	Fetal Kidney	kidney
34	chr12:63045400-63047400	Weak transcription	HMEC	breast
35	chr12:63045600-63051000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
36	chr12:63045800-63054000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr12:63046000-63048400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
38	chr12:63046000-63049600	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
39	chr12:63046000-63054000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr12:63046600-63047600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
41	chr12:63047000-63047800	Enhancers	Liver	Liver
42	chr12:63047000-63051800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr12:63047200-63047400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr12:63047200-63047400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
45	chr12:63047200-63047600	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
46	chr12:63047200-63047600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
47	chr12:63047200-63047600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
48	chr12:63047200-63047600	Enhancers	A549	lung
49	chr12:63047200-63047800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr12:63047200-63048000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell

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