Variant report

Variant	rs10877894
Chromosome Location	chr12:63020745-63020746
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:63000207..63003968-chr12:63019804..63022918,4	MCF-7	breast:
2	chr12:63017661..63021132-chr12:63021138..63024799,3	K562	blood:
3	chr12:63018644..63021186-chr12:63028824..63030627,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10877888	0.81[JPT][hapmap]
rs10877889	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10877895	0.81[CHB][hapmap]
rs10877900	0.96[CEU][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11174572	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11174573	0.95[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11174577	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12308388	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12822171	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1498712	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2048499	0.84[EUR][1000 genomes]
rs2132358	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2133302	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7137950	0.95[CEU][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7968360	0.93[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10877894	MYO1A	cis	cerebellum	SCAN

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62999400-63025000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr12:63000800-63024200	Weak transcription	Fetal Brain Female	brain
3	chr12:63003200-63023800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr12:63007800-63024800	Weak transcription	NH-A	brain
5	chr12:63008000-63023600	Weak transcription	NHDF-Ad	bronchial
6	chr12:63010200-63025200	Weak transcription	HSMMtube	muscle
7	chr12:63010600-63022200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr12:63011600-63023200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr12:63012400-63023800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr12:63012600-63023400	Weak transcription	A549	lung
11	chr12:63013800-63025200	Weak transcription	Right Atrium	heart
12	chr12:63016200-63022400	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr12:63016400-63022400	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr12:63019400-63022800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr12:63019400-63025000	Weak transcription	Adipose Nuclei	Adipose
16	chr12:63019600-63025400	Weak transcription	Pancreas	Pancrea
17	chr12:63019800-63022400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr12:63019800-63022400	Weak transcription	Osteobl	bone
19	chr12:63019800-63022600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr12:63019800-63022600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr12:63019800-63025200	Weak transcription	Liver	Liver
22	chr12:63019800-63025800	Weak transcription	Placenta	Placenta
23	chr12:63020000-63020800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr12:63020200-63021200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr12:63020400-63020800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr12:63020600-63020800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr12:63020600-63020800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr12:63020600-63021000	Enhancers	HepG2	liver
29	chr12:63020600-63021200	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr12:63020600-63021400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr12:63020600-63021800	Enhancers	HMEC	breast

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