Variant report

Variant	rs10877900
Chromosome Location	chr12:63034691-63034692
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:62995253..63000922-chr12:63028846..63036538,11	MCF-7	breast:
2	chr12:63033523..63036576-chr12:63048236..63051524,3	K562	blood:
3	chr12:62995975..62997976-chr12:63032491..63035409,2	MCF-7	breast:
4	chr12:62995871..62997574-chr12:63032709..63034792,2	K562	blood:
5	chr12:63032737..63035703-chr12:63097424..63099725,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000221949	Chromatin interaction
ENSG00000199179	Chromatin interaction
ENSG00000257354	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10877889	0.92[CEU][hapmap];0.91[JPT][hapmap];0.85[EUR][1000 genomes]
rs10877894	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11174572	0.87[CEU][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11174573	0.91[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11174577	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12308388	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12822171	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1498712	0.96[CEU][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2048499	0.81[EUR][1000 genomes]
rs2132358	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2133302	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7137950	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7968360	0.96[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63026600-63049800	Weak transcription	Right Atrium	heart
2	chr12:63030000-63038400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr12:63030000-63040400	Weak transcription	Brain Hippocampus Middle	brain
4	chr12:63030000-63040800	Weak transcription	Brain Angular Gyrus	brain
5	chr12:63030400-63035000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr12:63030400-63035400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr12:63030400-63040200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr12:63030400-63040600	Weak transcription	Brain Substantia Nigra	brain
9	chr12:63030400-63040800	Weak transcription	Brain Anterior Caudate	brain
10	chr12:63031600-63041000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr12:63031800-63037000	Weak transcription	Fetal Intestine Small	intestine
12	chr12:63031800-63040200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr12:63031800-63047000	Weak transcription	Liver	Liver
14	chr12:63032000-63034800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr12:63032000-63034800	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr12:63032000-63035000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr12:63032000-63038400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr12:63032000-63039000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr12:63032200-63034800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr12:63032200-63034800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr12:63032200-63035000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr12:63032400-63034800	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr12:63033800-63035600	Enhancers	HepG2	liver
24	chr12:63034000-63034800	Enhancers	A549	lung
25	chr12:63034000-63035200	Enhancers	Muscle Satellite Cultured Cells	--
26	chr12:63034000-63035600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr12:63034000-63035600	Enhancers	Dnd41	blood
28	chr12:63034200-63035200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr12:63034200-63035200	Enhancers	Osteobl	bone
30	chr12:63034200-63035400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr12:63034200-63035400	Enhancers	HUVEC	blood vessel
32	chr12:63034200-63035600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr12:63034200-63035600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr12:63034400-63034800	Enhancers	GM12878-XiMat	blood
35	chr12:63034400-63035000	Enhancers	Primary hematopoietic stem cells	blood
36	chr12:63034400-63035200	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr12:63034400-63035200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
38	chr12:63034400-63035200	Enhancers	Fetal Thymus	thymus
39	chr12:63034400-63035400	Enhancers	Primary T killer memory cells from peripheral blood	blood
40	chr12:63034400-63035400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr12:63034400-63035400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr12:63034400-63035400	Enhancers	NHLF	lung
43	chr12:63034400-63035600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr12:63034400-63035600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr12:63034400-63035600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr12:63034400-63035600	Enhancers	Primary T helper cells PMA-I stimulated	--
47	chr12:63034400-63035600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr12:63034400-63035600	Enhancers	NHDF-Ad	bronchial
49	chr12:63034400-63035800	Enhancers	Primary T cells fromperipheralblood	blood
50	chr12:63034400-63035800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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