Variant report

Variant	rs10879340
Chromosome Location	chr12:41295126-41295127
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10506177	0.91[ASN][1000 genomes]
rs10784898	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10784901	0.81[ASN][1000 genomes]
rs10879259	0.83[EUR][1000 genomes]
rs10879294	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10879339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11178829	0.88[ASN][1000 genomes]
rs11178838	0.89[ASN][1000 genomes]
rs11178839	0.89[ASN][1000 genomes]
rs11178848	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11178884	0.89[ASN][1000 genomes]
rs11178887	0.89[ASN][1000 genomes]
rs11178935	0.89[ASN][1000 genomes]
rs11178962	0.91[ASN][1000 genomes]
rs11178967	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11178979	0.88[CEU][hapmap];0.90[CHB][hapmap];0.93[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11179030	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12317351	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12368083	0.88[ASN][1000 genomes]
rs12371725	0.83[ASN][1000 genomes]
rs12423197	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12424493	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1579194	0.83[ASN][1000 genomes]
rs17543645	0.91[ASN][1000 genomes]
rs17544096	0.91[ASN][1000 genomes]
rs1822598	0.81[ASN][1000 genomes]
rs1822599	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs184321	0.83[ASN][1000 genomes]
rs1928561	0.83[ASN][1000 genomes]
rs2583991	0.83[ASN][1000 genomes]
rs2583992	0.84[ASN][1000 genomes]
rs2772461	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2897101	0.83[EUR][1000 genomes]
rs312270	0.83[ASN][1000 genomes]
rs312271	0.83[ASN][1000 genomes]
rs312274	0.81[ASN][1000 genomes]
rs312276	0.84[ASN][1000 genomes]
rs312283	0.83[ASN][1000 genomes]
rs4768312	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4768316	0.89[ASN][1000 genomes]
rs4768317	0.89[ASN][1000 genomes]
rs66578805	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7300719	0.84[ASN][1000 genomes]
rs7309918	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73118764	0.83[ASN][1000 genomes]
rs73120761	0.88[ASN][1000 genomes]
rs73124566	0.89[ASN][1000 genomes]
rs7967262	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7970447	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs913831	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427909	chr12:41054306-41322257	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832380	chr12:41132306-41323961	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv497867	chr12:41286305-41728650	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3343311	chr12:41294984-41295440	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41285000-41304600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr12:41294800-41297000	Weak transcription	Ovary	ovary

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