Variant report

Variant	rs66578805
Chromosome Location	chr12:41264460-41264461
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10506177	0.85[ASN][1000 genomes]
rs10784898	0.84[ASN][1000 genomes]
rs10784901	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10879294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10879339	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10879340	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11178829	0.86[ASN][1000 genomes]
rs11178838	0.87[ASN][1000 genomes]
rs11178839	0.87[ASN][1000 genomes]
rs11178843	0.86[AFR][1000 genomes]
rs11178848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11178884	0.87[ASN][1000 genomes]
rs11178887	0.87[ASN][1000 genomes]
rs11178935	0.83[ASN][1000 genomes]
rs11178962	0.85[ASN][1000 genomes]
rs11178967	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1126373	0.80[EUR][1000 genomes]
rs12301919	0.86[AFR][1000 genomes]
rs12317351	0.97[ASN][1000 genomes]
rs12368083	0.86[ASN][1000 genomes]
rs12371725	0.81[ASN][1000 genomes]
rs1579194	0.81[ASN][1000 genomes]
rs17543645	0.85[ASN][1000 genomes]
rs17544096	0.85[ASN][1000 genomes]
rs1822598	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1822599	0.84[ASN][1000 genomes]
rs184321	0.81[ASN][1000 genomes]
rs1928561	0.81[ASN][1000 genomes]
rs2583991	0.81[ASN][1000 genomes]
rs2583992	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2772461	0.88[ASN][1000 genomes]
rs312270	0.81[ASN][1000 genomes]
rs312271	0.81[ASN][1000 genomes]
rs312276	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs312283	0.81[ASN][1000 genomes]
rs4360771	0.80[EUR][1000 genomes]
rs4768312	0.88[ASN][1000 genomes]
rs4768316	0.87[ASN][1000 genomes]
rs4768317	0.87[ASN][1000 genomes]
rs7300719	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73118764	0.81[ASN][1000 genomes]
rs73120761	0.86[ASN][1000 genomes]
rs73124566	0.87[ASN][1000 genomes]
rs7967262	0.81[ASN][1000 genomes]
rs7970447	0.83[ASN][1000 genomes]
rs913831	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427909	chr12:41054306-41322257	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832380	chr12:41132306-41323961	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41226800-41266400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links