Variant report

Variant	rs10880608
Chromosome Location	chr12:44371763-44371764
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10736018	0.93[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748386	0.84[ASN][1000 genomes]
rs10785492	1.00[CEU][hapmap];0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10880616	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs10880617	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs1098878	0.83[YRI][hapmap];0.90[ASN][1000 genomes]
rs11182382	0.87[YRI][hapmap];0.87[ASN][1000 genomes]
rs11182384	0.90[CEU][hapmap]
rs11182385	0.89[CEU][hapmap]
rs11182396	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11182402	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11182405	0.89[CEU][hapmap]
rs12099769	0.91[CEU][hapmap]
rs12296857	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs12313365	0.90[EUR][1000 genomes]
rs12322164	0.90[ASN][1000 genomes]
rs1565620	0.89[CEU][hapmap]
rs1688723	0.90[ASN][1000 genomes]
rs17094013	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1976211	0.91[CEU][hapmap]
rs2407788	1.00[CEU][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3929354	0.91[CEU][hapmap]
rs4474500	0.81[ASN][1000 genomes]
rs6582494	0.91[EUR][1000 genomes]
rs7301406	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7312422	1.00[CEU][hapmap];0.81[YRI][hapmap];0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7959226	0.91[CEU][hapmap]
rs7980005	0.89[CEU][hapmap]
rs842194	0.87[YRI][hapmap]
rs842199	0.81[YRI][hapmap]
rs842202	0.84[ASN][1000 genomes]
rs859699	0.90[ASN][1000 genomes]
rs863580	0.83[YRI][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832390	chr12:44318071-44512114	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1041188	chr12:44331098-44528712	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44343600-44376800	Weak transcription	Pancreas	Pancrea
2	chr12:44361400-44401400	Weak transcription	Aorta	Aorta
3	chr12:44363800-44382400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr12:44364600-44393200	Weak transcription	Small Intestine	intestine
5	chr12:44364800-44377000	Weak transcription	Left Ventricle	heart
6	chr12:44366000-44375600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr12:44366200-44373400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr12:44371200-44372000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links