Variant report

Variant	rs7301406
Chromosome Location	chr12:44391937-44391938
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10736018	0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10748386	0.92[ASN][1000 genomes]
rs10785492	0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10880608	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1098878	0.80[ASN][1000 genomes]
rs12322164	0.80[ASN][1000 genomes]
rs1688723	0.80[ASN][1000 genomes]
rs2407788	0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2407789	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4474500	0.89[ASN][1000 genomes]
rs7296132	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7312422	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs859699	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832390	chr12:44318071-44512114	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1041188	chr12:44331098-44528712	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44361400-44401400	Weak transcription	Aorta	Aorta
2	chr12:44364600-44393200	Weak transcription	Small Intestine	intestine
3	chr12:44383200-44402400	Weak transcription	HSMMtube	muscle
4	chr12:44383600-44394000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr12:44384400-44399600	Weak transcription	Fetal Intestine Small	intestine
6	chr12:44386800-44394400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr12:44387400-44399200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr12:44387600-44399400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr12:44390000-44394400	Weak transcription	HepG2	liver
10	chr12:44390800-44439200	Weak transcription	Esophagus	oesophagus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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