Variant report

Variant	rs10880936
Chromosome Location	chr12:46608562-46608563
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:46601918..46605358-chr12:46605865..46610216,5	MCF-7	breast:
2	chr12:46573561..46575432-chr12:46607086..46609035,3	MCF-7	breast:
3	chr12:46606613..46608116-chr12:46608247..46611196,2	K562	blood:
4	chr12:46604867..46608116-chr12:46608247..46612042,4	K562	blood:
5	chr12:46606426..46610447-chr12:46660257..46663877,8	MCF-7	breast:
6	chr12:46593902..46597897-chr12:46605177..46609280,4	MCF-7	breast:
7	chr12:46601000..46609556-chr12:46658880..46665180,16	MCF-7	breast:
8	chr12:46607546..46609190-chr12:46649990..46652832,2	MCF-7	breast:
9	chr12:46594018..46595589-chr12:46607085..46608611,2	K562	blood:
10	chr12:46573708..46576866-chr12:46605688..46609208,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000111371	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10160965	0.91[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10219550	1.00[CHB][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs10880937	0.91[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.87[YRI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10880938	0.91[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.80[YRI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10880940	0.82[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[YRI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10880941	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.93[YRI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10880942	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11183397	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11183401	0.90[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12307102	0.90[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1822740	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1822741	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2125644	1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs57668910	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58776177	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7953774	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7965237	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7971883	1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs7975060	0.93[ASN][1000 genomes]
rs7980222	0.83[YRI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs963325	1.00[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:46590800-46613200	Strong transcription	Hela-S3	cervix
2	chr12:46591000-46613200	Strong transcription	HUES6 Cell Line	embryonic stem cell
3	chr12:46591000-46613600	Weak transcription	Fetal Brain Male	brain
4	chr12:46591000-46613600	Weak transcription	Gastric	stomach
5	chr12:46592400-46609800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr12:46592400-46613400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr12:46592800-46654200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr12:46596000-46618200	Weak transcription	Aorta	Aorta
9	chr12:46597400-46614200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr12:46597600-46659600	Weak transcription	Colonic Mucosa	Colon
11	chr12:46600000-46613600	Weak transcription	NHLF	lung
12	chr12:46601200-46613200	Weak transcription	NH-A	brain
13	chr12:46601400-46613200	Weak transcription	Fetal Brain Female	brain
14	chr12:46603600-46612200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr12:46604000-46608600	Weak transcription	Right Ventricle	heart
16	chr12:46604000-46608800	Weak transcription	Right Atrium	heart
17	chr12:46604000-46609800	Weak transcription	Psoas Muscle	Psoas
18	chr12:46604000-46610000	Weak transcription	Lung	lung
19	chr12:46604000-46610200	Weak transcription	Brain Germinal Matrix	brain
20	chr12:46604000-46613400	Weak transcription	Brain Angular Gyrus	brain
21	chr12:46604000-46623400	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr12:46604000-46633800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr12:46604000-46637400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr12:46604200-46608600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr12:46604200-46608600	Weak transcription	Esophagus	oesophagus
26	chr12:46604200-46608800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr12:46604200-46608800	Weak transcription	HSMMtube	muscle
28	chr12:46604200-46609200	Strong transcription	H1 Cell Line	embryonic stem cell
29	chr12:46604200-46610200	Weak transcription	Pancreas	Pancrea
30	chr12:46604200-46611400	Weak transcription	Brain Hippocampus Middle	brain
31	chr12:46604200-46611400	Weak transcription	Brain Substantia Nigra	brain
32	chr12:46604200-46612200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr12:46604200-46612600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
34	chr12:46604200-46613600	Weak transcription	Fetal Muscle Trunk	muscle
35	chr12:46604400-46608600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr12:46604400-46608600	Weak transcription	Brain Anterior Caudate	brain
37	chr12:46604400-46608600	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr12:46604400-46608600	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr12:46604400-46608800	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr12:46604400-46609800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr12:46604400-46611600	Weak transcription	HUVEC	blood vessel
42	chr12:46604400-46613000	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chr12:46604400-46613400	Weak transcription	Brain Cingulate Gyrus	brain
44	chr12:46604400-46618600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr12:46604600-46610400	Genic enhancers	Fetal Thymus	thymus
46	chr12:46604800-46609200	Strong transcription	K562	blood
47	chr12:46605000-46615000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr12:46605000-46615200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr12:46605200-46608800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr12:46605200-46612600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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