Variant report

Variant	rs10882084
Chromosome Location	chr10:94329113-94329114
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94327650..94337583-chr10:94349444..94356782,22	K562	blood:
2	chr10:94328777..94330942-chr10:94350983..94353226,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138160	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10882086	0.89[CHB][hapmap];0.83[CHD][hapmap]
rs10882088	0.89[CHB][hapmap];0.83[CHD][hapmap]
rs11187108	0.89[CHB][hapmap];0.83[CHD][hapmap]
rs11187115	0.89[CHB][hapmap]
rs11595187	0.89[CHB][hapmap]
rs12411448	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs12415246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12416180	0.89[CHB][hapmap]
rs17107734	0.88[CHB][hapmap]
rs1999763	0.89[CHB][hapmap];0.88[CHD][hapmap]
rs1999764	0.89[CHB][hapmap]
rs2275219	0.89[CHB][hapmap];0.83[CHD][hapmap]
rs2297743	0.89[CHB][hapmap]
rs35650880	1.00[AFR][1000 genomes]
rs3758503	0.89[CHB][hapmap];0.83[CHD][hapmap]
rs3758505	0.89[CHB][hapmap];0.83[CHD][hapmap]
rs4933235	1.00[AFR][1000 genomes]
rs4933731	0.88[CHB][hapmap];0.83[CHD][hapmap]
rs6583820	0.82[CHD][hapmap]
rs7068618	0.89[CHB][hapmap];0.88[CHD][hapmap]
rs7075851	0.89[CHB][hapmap]
rs7079099	0.89[CHB][hapmap]
rs7900584	0.89[CHB][hapmap];0.83[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	esv1792868	chr10:94232247-94409749	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv895894	chr10:94249982-94452430	Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv895895	chr10:94304132-94372706	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94272200-94332000	Weak transcription	Rectal Smooth Muscle	rectum
2	chr10:94272200-94332200	Weak transcription	Gastric	stomach
3	chr10:94277200-94331200	Weak transcription	Stomach Mucosa	stomach
4	chr10:94277800-94332200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr10:94304600-94331400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr10:94314200-94331000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr10:94314200-94331200	Weak transcription	Brain Substantia Nigra	brain
8	chr10:94314200-94331200	Weak transcription	Small Intestine	intestine
9	chr10:94314200-94331400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr10:94314200-94331400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr10:94314200-94331600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr10:94314200-94332000	Weak transcription	Colonic Mucosa	Colon
13	chr10:94314400-94331000	Weak transcription	Psoas Muscle	Psoas
14	chr10:94314400-94331200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr10:94314400-94331600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr10:94314400-94332200	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr10:94314400-94332400	Weak transcription	Aorta	Aorta
18	chr10:94314400-94332400	Weak transcription	Lung	lung
19	chr10:94314600-94331200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr10:94315000-94331200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr10:94315200-94331200	Weak transcription	Brain Angular Gyrus	brain
22	chr10:94316600-94331400	Weak transcription	Brain Cingulate Gyrus	brain
23	chr10:94317400-94331200	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr10:94317600-94332200	Weak transcription	Fetal Thymus	thymus
25	chr10:94318000-94331200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr10:94318000-94332000	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr10:94319000-94331200	Weak transcription	Right Ventricle	heart
28	chr10:94319400-94331600	Weak transcription	HSMMtube	muscle
29	chr10:94319400-94332200	Weak transcription	Fetal Kidney	kidney
30	chr10:94319600-94331200	Weak transcription	Fetal Lung	lung
31	chr10:94319800-94332000	Weak transcription	Brain Germinal Matrix	brain
32	chr10:94320200-94330200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr10:94320200-94331800	Weak transcription	Brain Hippocampus Middle	brain
34	chr10:94320400-94331400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr10:94320400-94331400	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr10:94320400-94331400	Weak transcription	Adipose Nuclei	Adipose
37	chr10:94320400-94331400	Weak transcription	Liver	Liver
38	chr10:94320400-94331400	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr10:94320400-94332000	Weak transcription	Placenta	Placenta
40	chr10:94320400-94332200	Weak transcription	Primary B cells from cord blood	blood
41	chr10:94320400-94332200	Weak transcription	Primary hematopoietic stem cells	blood
42	chr10:94320400-94332200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr10:94320600-94331400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr10:94320600-94331400	Weak transcription	Stomach Smooth Muscle	stomach
45	chr10:94320800-94329600	Weak transcription	Thymus	Thymus
46	chr10:94320800-94330000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr10:94320800-94330200	Weak transcription	Fetal Brain Female	brain
48	chr10:94320800-94331200	Weak transcription	Colon Smooth Muscle	Colon
49	chr10:94320800-94331400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr10:94320800-94331400	Weak transcription	Fetal Intestine Large	intestine

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