Variant report

Variant	rs10882086
Chromosome Location	chr10:94365025-94365026
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94347834..94349823-chr10:94363699..94366269,2	MCF-7	breast:
2	chr10:94362820..94365459-chr10:94365788..94367385,2	K562	blood:
3	chr10:94356245..94358486-chr10:94364467..94366056,2	MCF-7	breast:
4	chr10:94349845..94352278-chr10:94364574..94366521,2	K562	blood:
5	chr10:94362535..94365848-chr10:94373113..94374744,3	K562	blood:

Variant related genes	Relation type
ENSG00000184111	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10882066	0.80[ASN][1000 genomes]
rs10882078	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10882084	0.89[CHB][hapmap];0.83[CHD][hapmap]
rs10882088	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882093	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11186999	0.80[ASN][1000 genomes]
rs11187037	0.80[ASN][1000 genomes]
rs11187077	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11187079	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11187092	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187108	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11187115	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11595187	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12218324	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12218329	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12411517	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12411873	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12414433	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12415807	0.80[ASN][1000 genomes]
rs12416180	0.85[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17107734	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1999763	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1999764	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2275219	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2297743	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2421940	0.82[ASW][hapmap];0.85[CEU][hapmap];0.89[CHB][hapmap];0.83[CHD][hapmap];0.89[GIH][hapmap];0.90[JPT][hapmap];0.80[MEX][hapmap];0.81[TSI][hapmap]
rs3758503	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3758505	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4646954	0.89[CHB][hapmap];0.89[CHD][hapmap];0.92[GIH][hapmap];0.89[JPT][hapmap];0.82[MEX][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4933232	0.80[ASN][1000 genomes]
rs4933728	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4933731	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933732	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6583820	0.85[CEU][hapmap];0.89[CHB][hapmap];0.88[CHD][hapmap];0.89[GIH][hapmap];0.90[JPT][hapmap];0.80[MEX][hapmap];0.81[TSI][hapmap]
rs7068118	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7068618	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.81[TSI][hapmap]
rs7075073	0.80[ASN][1000 genomes]
rs7075851	1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs7078413	0.81[JPT][hapmap]
rs7079099	0.82[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7089987	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7093437	0.80[ASN][1000 genomes]
rs7097800	0.89[CHB][hapmap];0.86[GIH][hapmap];0.85[JPT][hapmap]
rs74151674	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7895832	0.85[CEU][hapmap];0.89[CHB][hapmap];0.84[JPT][hapmap]
rs7898114	0.86[ASN][1000 genomes]
rs7898862	0.80[ASN][1000 genomes]
rs7900584	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7910605	0.86[GIH][hapmap];0.81[JPT][hapmap]
rs7916594	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	esv1792868	chr10:94232247-94409749	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv895894	chr10:94249982-94452430	Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv895895	chr10:94304132-94372706	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94353600-94403800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:94354000-94372000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:94354000-94420000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr10:94354200-94369000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr10:94354200-94416000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr10:94354800-94366000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr10:94354800-94366000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:94354800-94373400	Weak transcription	Fetal Intestine Small	intestine
9	chr10:94355000-94366000	Weak transcription	Fetal Muscle Leg	muscle
10	chr10:94355000-94368200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr10:94355000-94372200	Weak transcription	HSMM	muscle
12	chr10:94355200-94372000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr10:94355400-94365600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr10:94355600-94366000	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr10:94355600-94368400	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr10:94355800-94369000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr10:94355800-94369200	Weak transcription	NH-A	brain
18	chr10:94355800-94369400	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr10:94356000-94367600	Weak transcription	Fetal Stomach	stomach
20	chr10:94356800-94366800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr10:94356800-94385600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr10:94357000-94365800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr10:94357000-94367200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr10:94358600-94372200	Weak transcription	K562	blood
25	chr10:94359000-94366600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr10:94361200-94365200	Enhancers	HUVEC	blood vessel
27	chr10:94361800-94365600	Weak transcription	Fetal Thymus	thymus
28	chr10:94361800-94366400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr10:94361800-94372600	Weak transcription	NHEK	skin
30	chr10:94362000-94365600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr10:94362000-94366000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr10:94362000-94372600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr10:94362000-94372600	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr10:94362000-94381200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr10:94362000-94389400	Weak transcription	NHLF	lung
36	chr10:94362000-94399800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr10:94362200-94366000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr10:94362400-94365200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
39	chr10:94362400-94365800	Weak transcription	HepG2	liver
40	chr10:94362400-94368600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr10:94362400-94371800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr10:94362600-94365200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
43	chr10:94362600-94367000	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr10:94362600-94376400	Weak transcription	Fetal Lung	lung
45	chr10:94362800-94372200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr10:94363600-94366200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr10:94363600-94410200	Weak transcription	Fetal Kidney	kidney
48	chr10:94364000-94390600	Strong transcription	HUES64 Cell Line	embryonic stem cell
49	chr10:94364000-94416400	Strong transcription	Dnd41	blood
50	chr10:94364200-94365200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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