Variant report

Variant	rs7895832
Chromosome Location	chr10:94276526-94276527
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94274603..94278962-chr10:94330841..94335301,9	MCF-7	breast:
2	chr10:94274982..94277833-chr10:94333468..94335279,2	K562	blood:
3	chr10:94276477..94277687-chr10:94333813..94334950,12	MCF-7	breast:
4	chr10:94276434..94277468-chr10:94333831..94335118,8	K562	blood:
5	chr10:94276333..94278626-chr10:94332355..94335279,2	K562	blood:
6	chr10:94276451..94277382-chr10:94333873..94334623,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119912	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10882066	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882069	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10882070	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10882078	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10882086	0.85[CEU][hapmap];0.89[CHB][hapmap];0.84[JPT][hapmap]
rs10882088	0.85[CEU][hapmap];0.89[CHB][hapmap];0.84[JPT][hapmap]
rs11186999	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11187013	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11187018	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11187034	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11187037	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11187077	0.90[EUR][1000 genomes]
rs11187079	0.92[EUR][1000 genomes]
rs11187108	0.85[CEU][hapmap];0.89[CHB][hapmap]
rs11187115	0.88[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap]
rs11595187	0.88[CEU][hapmap];0.89[CHB][hapmap];1.00[YRI][hapmap]
rs12218329	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12411517	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12414433	0.92[EUR][1000 genomes]
rs12415807	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12416180	1.00[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17107734	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1999763	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1999764	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2275219	0.85[CEU][hapmap];0.89[CHB][hapmap];0.84[JPT][hapmap]
rs2297743	0.88[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap]
rs2421940	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35118791	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35973022	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3758503	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.92[EUR][1000 genomes]
rs3758505	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.92[EUR][1000 genomes]
rs3781237	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4646954	0.84[JPT][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4646958	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4933232	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4933728	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4933731	0.85[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap]
rs57936176	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59415214	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6583820	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7068618	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7075073	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7075851	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7079099	1.00[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7087153	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7089987	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7093437	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7898114	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7898862	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7900584	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.92[EUR][1000 genomes]
rs7910605	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs7916460	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv551924	chr10:94212742-94290484	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv551925	chr10:94224165-94288429	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv1802816	chr10:94232247-94294291	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	esv1792868	chr10:94232247-94409749	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
6	nsv895894	chr10:94249982-94452430	Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94208400-94276800	Weak transcription	Stomach Mucosa	stomach
2	chr10:94239600-94280400	Weak transcription	Fetal Brain Male	brain
3	chr10:94244000-94303000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr10:94250200-94289400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr10:94250200-94295200	Weak transcription	Pancreas	Pancrea
6	chr10:94250200-94297200	Weak transcription	Brain Germinal Matrix	brain
7	chr10:94250200-94313800	Weak transcription	Brain Substantia Nigra	brain
8	chr10:94250400-94301000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr10:94250400-94307400	Weak transcription	Spleen	Spleen
10	chr10:94250800-94276600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr10:94252600-94302200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr10:94257600-94289400	Weak transcription	Right Ventricle	heart
13	chr10:94259400-94289000	Weak transcription	NH-A	brain
14	chr10:94260000-94296800	Weak transcription	Esophagus	oesophagus
15	chr10:94262000-94289200	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr10:94262000-94297600	Weak transcription	Psoas Muscle	Psoas
17	chr10:94262000-94307400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr10:94262400-94276800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr10:94264200-94295000	Weak transcription	Small Intestine	intestine
20	chr10:94265800-94290400	Weak transcription	Osteobl	bone
21	chr10:94267200-94283000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr10:94267600-94297400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr10:94267600-94314000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:94267800-94328800	Weak transcription	Fetal Heart	heart
25	chr10:94268000-94313800	Weak transcription	Colon Smooth Muscle	Colon
26	chr10:94268000-94313800	Weak transcription	NHLF	lung
27	chr10:94268600-94290800	Weak transcription	Fetal Lung	lung
28	chr10:94268600-94295200	Weak transcription	Fetal Muscle Trunk	muscle
29	chr10:94268600-94300000	Weak transcription	Colonic Mucosa	Colon
30	chr10:94268800-94290000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr10:94269000-94290200	Weak transcription	Fetal Kidney	kidney
32	chr10:94269400-94314000	Weak transcription	Aorta	Aorta
33	chr10:94269600-94276600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr10:94269600-94277000	Weak transcription	Brain Anterior Caudate	brain
35	chr10:94269600-94287400	Weak transcription	Fetal Intestine Small	intestine
36	chr10:94269600-94289200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr10:94269600-94289200	Weak transcription	Fetal Stomach	stomach
38	chr10:94269600-94314000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr10:94269800-94290000	Weak transcription	Ovary	ovary
40	chr10:94269800-94295000	Weak transcription	Lung	lung
41	chr10:94270000-94289200	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr10:94270200-94289400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr10:94272000-94286200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr10:94272000-94288800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr10:94272000-94317200	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr10:94272200-94277000	Weak transcription	Brain Angular Gyrus	brain
47	chr10:94272200-94282800	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr10:94272200-94288600	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr10:94272200-94288800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr10:94272200-94288800	Weak transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links