Variant report

Variant	rs4933728
Chromosome Location	chr10:94317506-94317507
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10882066	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10882069	0.86[ASN][1000 genomes]
rs10882070	0.82[ASN][1000 genomes]
rs10882078	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10882086	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10882088	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10882093	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11186999	0.89[ASN][1000 genomes]
rs11187013	0.87[ASN][1000 genomes]
rs11187018	0.84[EUR][1000 genomes]
rs11187034	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11187037	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11187077	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11187079	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11187092	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11187108	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11187115	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11595187	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12218324	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12218329	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12411517	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12411873	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12414433	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12415807	0.89[ASN][1000 genomes]
rs12416180	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17107734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1999763	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1999764	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2275219	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2297743	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2421940	0.80[AFR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35118791	0.83[ASN][1000 genomes]
rs3758503	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3758505	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4646954	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4646958	0.83[ASN][1000 genomes]
rs4933232	0.89[ASN][1000 genomes]
rs4933731	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4933732	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57936176	0.83[ASN][1000 genomes]
rs6583820	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7068118	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7068618	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7075073	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7075851	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7079099	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7087153	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7089987	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7093437	0.89[ASN][1000 genomes]
rs74151674	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7895832	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7898114	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7898862	0.89[ASN][1000 genomes]
rs7900584	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7916460	0.83[ASN][1000 genomes]
rs7916594	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	esv1792868	chr10:94232247-94409749	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv895894	chr10:94249982-94452430	Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv895895	chr10:94304132-94372706	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94267800-94328800	Weak transcription	Fetal Heart	heart
2	chr10:94272200-94332000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr10:94272200-94332200	Weak transcription	Gastric	stomach
4	chr10:94277200-94331200	Weak transcription	Stomach Mucosa	stomach
5	chr10:94277800-94332200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr10:94290400-94318800	Weak transcription	Right Ventricle	heart
7	chr10:94295400-94318000	Weak transcription	NH-A	brain
8	chr10:94295600-94318600	Weak transcription	Fetal Kidney	kidney
9	chr10:94298600-94318600	Weak transcription	Hela-S3	cervix
10	chr10:94304600-94318800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr10:94304600-94318800	Weak transcription	K562	blood
12	chr10:94304600-94331400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr10:94305400-94318800	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr10:94305400-94323600	Weak transcription	HMEC	breast
15	chr10:94310200-94325000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr10:94313800-94327000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr10:94314200-94317600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr10:94314200-94318800	Weak transcription	HSMMtube	muscle
19	chr10:94314200-94319000	Weak transcription	NHEK	skin
20	chr10:94314200-94320200	Weak transcription	Esophagus	oesophagus
21	chr10:94314200-94320800	Strong transcription	Dnd41	blood
22	chr10:94314200-94325800	Weak transcription	Pancreas	Pancrea
23	chr10:94314200-94326800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr10:94314200-94327200	Weak transcription	Brain Anterior Caudate	brain
25	chr10:94314200-94328800	Weak transcription	NHLF	lung
26	chr10:94314200-94331000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr10:94314200-94331200	Weak transcription	Brain Substantia Nigra	brain
28	chr10:94314200-94331200	Weak transcription	Small Intestine	intestine
29	chr10:94314200-94331400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr10:94314200-94331400	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr10:94314200-94331600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr10:94314200-94332000	Weak transcription	Colonic Mucosa	Colon
33	chr10:94314400-94317600	Strong transcription	Fetal Thymus	thymus
34	chr10:94314400-94318400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr10:94314400-94318400	Weak transcription	Brain Hippocampus Middle	brain
36	chr10:94314400-94318800	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr10:94314400-94318800	Weak transcription	Brain Germinal Matrix	brain
38	chr10:94314400-94318800	Weak transcription	Fetal Brain Male	brain
39	chr10:94314400-94318800	Weak transcription	Fetal Intestine Large	intestine
40	chr10:94314400-94320000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr10:94314400-94320000	Weak transcription	Thymus	Thymus
42	chr10:94314400-94320000	Weak transcription	Spleen	Spleen
43	chr10:94314400-94320400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr10:94314400-94320400	Strong transcription	Liver	Liver
45	chr10:94314400-94323600	Weak transcription	Primary B cells from peripheral blood	blood
46	chr10:94314400-94327800	Weak transcription	NHDF-Ad	bronchial
47	chr10:94314400-94331000	Weak transcription	Psoas Muscle	Psoas
48	chr10:94314400-94331200	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr10:94314400-94331600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr10:94314400-94332200	Weak transcription	Primary neutrophils fromperipheralblood	blood

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