Variant report

Variant	rs7093437
Chromosome Location	chr10:94221611-94221612
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10882066	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882069	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882070	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882078	0.92[ASN][1000 genomes]
rs10882086	0.80[ASN][1000 genomes]
rs10882088	0.80[ASN][1000 genomes]
rs11186999	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187013	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11187016	0.89[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs11187018	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11187034	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11187037	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187077	0.83[ASN][1000 genomes]
rs11187079	0.86[ASN][1000 genomes]
rs11187092	0.80[ASN][1000 genomes]
rs11595187	0.80[ASN][1000 genomes]
rs12218324	0.80[ASN][1000 genomes]
rs12218329	0.92[ASN][1000 genomes]
rs12411517	0.90[ASN][1000 genomes]
rs12411873	0.80[ASN][1000 genomes]
rs12414433	0.86[ASN][1000 genomes]
rs12415807	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12416180	0.92[ASN][1000 genomes]
rs17107734	0.92[ASN][1000 genomes]
rs1999763	0.90[ASN][1000 genomes]
rs1999764	0.90[ASN][1000 genomes]
rs2275219	0.80[ASN][1000 genomes]
rs2297743	0.80[ASN][1000 genomes]
rs2421940	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35118791	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35973022	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3758503	0.86[ASN][1000 genomes]
rs3758505	0.86[ASN][1000 genomes]
rs3781237	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4646954	0.88[ASN][1000 genomes]
rs4646958	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4933232	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933728	0.89[ASN][1000 genomes]
rs4933731	0.80[ASN][1000 genomes]
rs57936176	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59415214	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6583815	0.92[AFR][1000 genomes]
rs6583817	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs6583820	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7068118	0.80[ASN][1000 genomes]
rs7068618	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7075073	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7075851	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7079099	0.92[ASN][1000 genomes]
rs7087153	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7089987	0.92[ASN][1000 genomes]
rs7091270	0.88[AFR][1000 genomes]
rs7097800	0.88[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7895832	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7898114	0.91[ASN][1000 genomes]
rs7898862	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900584	0.86[ASN][1000 genomes]
rs7910605	0.92[AFR][1000 genomes]
rs7910977	0.82[ASN][1000 genomes]
rs7916460	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv508600	chr10:94115025-94231917	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv551924	chr10:94212742-94290484	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94205800-94221800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:94206400-94222600	Weak transcription	HSMMtube	muscle
3	chr10:94207800-94222000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr10:94208000-94222400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr10:94208000-94223600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr10:94208000-94224000	Weak transcription	Fetal Kidney	kidney
7	chr10:94208400-94276800	Weak transcription	Stomach Mucosa	stomach
8	chr10:94209000-94225800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:94209400-94225800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:94209400-94231400	Strong transcription	Duodenum Mucosa	Duodenum
11	chr10:94209800-94234400	Weak transcription	Fetal Heart	heart
12	chr10:94210000-94224200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr10:94210000-94224800	Weak transcription	Brain Germinal Matrix	brain
14	chr10:94210000-94243000	Weak transcription	Fetal Brain Female	brain
15	chr10:94210400-94231800	Strong transcription	Adipose Nuclei	Adipose
16	chr10:94210400-94235600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr10:94210400-94239200	Weak transcription	Fetal Brain Male	brain
18	chr10:94210600-94231800	Strong transcription	Liver	Liver
19	chr10:94210600-94250000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr10:94211000-94235600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr10:94211200-94225800	Strong transcription	Osteobl	bone
22	chr10:94211400-94225800	Strong transcription	HUES6 Cell Line	embryonic stem cell
23	chr10:94211400-94231800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr10:94211400-94235600	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr10:94211400-94235800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr10:94211400-94253200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr10:94211800-94230600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr10:94212000-94232400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr10:94212200-94225800	Strong transcription	HUES48 Cell Line	embryonic stem cell
30	chr10:94212400-94233800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr10:94212600-94224800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr10:94212800-94224200	Weak transcription	NHLF	lung
33	chr10:94212800-94270400	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr10:94214200-94226400	Strong transcription	Sigmoid Colon	Sigmoid Colon
35	chr10:94214200-94230400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr10:94214400-94234200	Strong transcription	Fetal Stomach	stomach
37	chr10:94214800-94222600	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr10:94215000-94222400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr10:94215000-94222600	Weak transcription	Psoas Muscle	Psoas
40	chr10:94215000-94222800	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr10:94216200-94222400	Weak transcription	Fetal Muscle Trunk	muscle
42	chr10:94216200-94224800	Weak transcription	Colonic Mucosa	Colon
43	chr10:94216200-94225000	Weak transcription	NHDF-Ad	bronchial
44	chr10:94216400-94222800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr10:94216400-94223400	Weak transcription	Hela-S3	cervix
46	chr10:94216400-94223600	Weak transcription	Brain Substantia Nigra	brain
47	chr10:94216400-94224200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr10:94216600-94223400	Weak transcription	Gastric	stomach
49	chr10:94217000-94222600	Weak transcription	Right Ventricle	heart
50	chr10:94217000-94228600	Weak transcription	Esophagus	oesophagus

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