Variant report

Variant	rs11187016
Chromosome Location	chr10:94230429-94230430
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10786047	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10882066	0.82[ASN][1000 genomes]
rs10882069	0.80[ASN][1000 genomes]
rs10882086	0.89[CHB][hapmap];0.86[GIH][hapmap];0.85[JPT][hapmap]
rs10882088	0.89[CHB][hapmap];0.86[GIH][hapmap];0.85[JPT][hapmap]
rs11186999	0.82[ASN][1000 genomes]
rs11187000	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11187003	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11187004	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11187013	0.81[ASN][1000 genomes]
rs11187035	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11187037	0.82[ASN][1000 genomes]
rs11187060	0.80[JPT][hapmap]
rs11187108	0.89[CHB][hapmap];0.86[GIH][hapmap]
rs11187115	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs11595187	0.89[CHB][hapmap]
rs11814555	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12415807	0.82[ASN][1000 genomes]
rs12416180	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs17107734	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs1832197	0.80[JPT][hapmap]
rs1999763	0.89[CHB][hapmap];0.96[GIH][hapmap];0.90[JPT][hapmap]
rs1999764	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs2275219	0.89[CHB][hapmap];0.86[GIH][hapmap];0.85[JPT][hapmap]
rs2297743	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs2421940	0.96[GIH][hapmap];0.84[JPT][hapmap]
rs3758503	0.89[CHB][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap]
rs3758505	0.89[CHB][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap]
rs3781240	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4646954	0.93[GIH][hapmap];0.84[JPT][hapmap]
rs4933231	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4933232	0.82[ASN][1000 genomes]
rs4933725	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4933726	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4933731	0.88[CHB][hapmap];0.86[GIH][hapmap];0.85[JPT][hapmap]
rs6583815	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6583817	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583820	0.96[GIH][hapmap];0.84[JPT][hapmap];0.84[LWK][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes]
rs7068618	0.89[CHB][hapmap];0.96[GIH][hapmap];0.90[JPT][hapmap];0.84[LWK][hapmap];0.89[MKK][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7075073	0.82[ASN][1000 genomes]
rs7075851	0.90[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs7079099	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs7087153	0.95[AFR][1000 genomes]
rs7091270	0.99[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7093437	0.89[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7097800	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7895832	0.80[CHB][hapmap]
rs7898862	0.91[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7900584	0.89[CHB][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap]
rs7910605	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[LWK][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7910977	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7911558	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv508600	chr10:94115025-94231917	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv551924	chr10:94212742-94290484	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv551925	chr10:94224165-94288429	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94208400-94276800	Weak transcription	Stomach Mucosa	stomach
2	chr10:94209400-94231400	Strong transcription	Duodenum Mucosa	Duodenum
3	chr10:94209800-94234400	Weak transcription	Fetal Heart	heart
4	chr10:94210000-94243000	Weak transcription	Fetal Brain Female	brain
5	chr10:94210400-94231800	Strong transcription	Adipose Nuclei	Adipose
6	chr10:94210400-94235600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr10:94210400-94239200	Weak transcription	Fetal Brain Male	brain
8	chr10:94210600-94231800	Strong transcription	Liver	Liver
9	chr10:94210600-94250000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr10:94211000-94235600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr10:94211400-94231800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr10:94211400-94235600	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr10:94211400-94235800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr10:94211400-94253200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr10:94211800-94230600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr10:94212000-94232400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:94212400-94233800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr10:94212800-94270400	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr10:94214400-94234200	Strong transcription	Fetal Stomach	stomach
20	chr10:94217200-94232400	Weak transcription	Small Intestine	intestine
21	chr10:94217400-94251800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:94217600-94270200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr10:94217800-94245600	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr10:94218000-94245400	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr10:94218200-94251800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr10:94218400-94237800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr10:94219000-94231200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr10:94220000-94232000	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr10:94220200-94231200	Strong transcription	Stomach Smooth Muscle	stomach
30	chr10:94222200-94230800	Strong transcription	Duodenum Smooth Muscle	Duodenum
31	chr10:94222400-94231400	Strong transcription	Primary T cells from cord blood	blood
32	chr10:94222600-94243200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr10:94222800-94250800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr10:94223200-94252600	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr10:94224600-94238800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr10:94225400-94248800	Weak transcription	Brain Germinal Matrix	brain
37	chr10:94225600-94238600	Weak transcription	NHEK	skin
38	chr10:94225600-94248400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr10:94225600-94252600	Weak transcription	Fetal Kidney	kidney
40	chr10:94225800-94239000	Weak transcription	Right Ventricle	heart
41	chr10:94225800-94239200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr10:94226000-94245000	Weak transcription	K562	blood
43	chr10:94226200-94234200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr10:94227000-94231400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr10:94227200-94230600	Strong transcription	Primary B cells from peripheral blood	blood
46	chr10:94227200-94231400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr10:94227200-94231800	Strong transcription	Sigmoid Colon	Sigmoid Colon
48	chr10:94227400-94230600	Strong transcription	Primary T killer memory cells from peripheral blood	blood
49	chr10:94227400-94230600	Strong transcription	Dnd41	blood
50	chr10:94227400-94231200	Strong transcription	A549	lung

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