Variant report

Variant	rs7091270
Chromosome Location	chr10:94237425-94237426
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10786047	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11187000	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11187003	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11187004	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11187016	0.99[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11187035	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11814555	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2421945	0.86[JPT][hapmap]
rs3781240	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4304670	0.87[JPT][hapmap]
rs4933231	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4933725	0.80[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4933726	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6583815	0.96[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6583817	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6583820	0.88[YRI][hapmap];0.83[AFR][1000 genomes]
rs7068618	0.88[YRI][hapmap];0.85[AFR][1000 genomes]
rs7087153	0.94[AFR][1000 genomes]
rs7093437	0.88[AFR][1000 genomes]
rs7097800	0.80[CEU][hapmap];0.81[JPT][hapmap];0.88[YRI][hapmap];0.90[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7898862	0.90[AFR][1000 genomes]
rs7910605	0.80[CEU][hapmap];0.88[YRI][hapmap];0.96[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7910977	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7911558	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv551924	chr10:94212742-94290484	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv551925	chr10:94224165-94288429	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv1802816	chr10:94232247-94294291	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	esv1792868	chr10:94232247-94409749	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94208400-94276800	Weak transcription	Stomach Mucosa	stomach
2	chr10:94210000-94243000	Weak transcription	Fetal Brain Female	brain
3	chr10:94210400-94239200	Weak transcription	Fetal Brain Male	brain
4	chr10:94210600-94250000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr10:94211400-94253200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr10:94212800-94270400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr10:94217400-94251800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:94217600-94270200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr10:94217800-94245600	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr10:94218000-94245400	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr10:94218200-94251800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr10:94218400-94237800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr10:94222600-94243200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr10:94222800-94250800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr10:94223200-94252600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr10:94224600-94238800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr10:94225400-94248800	Weak transcription	Brain Germinal Matrix	brain
18	chr10:94225600-94238600	Weak transcription	NHEK	skin
19	chr10:94225600-94248400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr10:94225600-94252600	Weak transcription	Fetal Kidney	kidney
21	chr10:94225800-94239000	Weak transcription	Right Ventricle	heart
22	chr10:94225800-94239200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr10:94226000-94245000	Weak transcription	K562	blood
24	chr10:94227400-94251200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr10:94227800-94243000	Weak transcription	Colonic Mucosa	Colon
26	chr10:94228000-94242800	Weak transcription	NHDF-Ad	bronchial
27	chr10:94228800-94238400	Weak transcription	Brain Cingulate Gyrus	brain
28	chr10:94229200-94238000	Weak transcription	Osteobl	bone
29	chr10:94229200-94246400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr10:94229800-94238400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr10:94230000-94237800	Weak transcription	Brain Anterior Caudate	brain
32	chr10:94230000-94243200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr10:94230000-94276400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr10:94230200-94237600	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr10:94230200-94238000	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr10:94230200-94238000	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr10:94230200-94238000	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr10:94230200-94238200	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr10:94230200-94238200	Weak transcription	NH-A	brain
40	chr10:94230200-94238400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr10:94230200-94238400	Weak transcription	Fetal Muscle Leg	muscle
42	chr10:94230200-94238400	Weak transcription	Ovary	ovary
43	chr10:94230200-94238400	Weak transcription	Rectal Smooth Muscle	rectum
44	chr10:94230200-94239000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr10:94230200-94239000	Weak transcription	Pancreas	Pancrea
46	chr10:94230200-94239200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr10:94230200-94240200	Weak transcription	Spleen	Spleen
48	chr10:94230200-94243000	Weak transcription	Brain Hippocampus Middle	brain
49	chr10:94230200-94243000	Weak transcription	Lung	lung
50	chr10:94230200-94243200	Weak transcription	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links