Variant report

Variant	rs4933231
Chromosome Location	chr10:94206182-94206183
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10786047	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882086	0.81[JPT][hapmap]
rs10882088	0.81[JPT][hapmap]
rs11187000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11187003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187004	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187016	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11187034	0.81[ASN][1000 genomes]
rs11187035	0.85[EUR][1000 genomes]
rs11814555	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12415807	0.91[AFR][1000 genomes]
rs12416180	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs17107734	0.88[CHB][hapmap];0.83[JPT][hapmap]
rs1999763	0.85[JPT][hapmap]
rs1999764	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs2275219	0.81[JPT][hapmap]
rs2297743	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs2421940	0.90[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs35118791	0.83[ASN][1000 genomes]
rs3758503	0.85[JPT][hapmap]
rs3758505	0.85[JPT][hapmap]
rs3781240	0.96[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4646958	0.83[ASN][1000 genomes]
rs4933725	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4933731	0.81[JPT][hapmap]
rs57936176	0.83[ASN][1000 genomes]
rs6583815	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583817	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6583820	0.90[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs7068618	0.85[JPT][hapmap];1.00[YRI][hapmap]
rs7075851	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs7087153	0.83[ASN][1000 genomes]
rs7091270	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7097800	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7895832	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs7898862	0.81[AFR][1000 genomes]
rs7900584	0.85[JPT][hapmap]
rs7910605	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7910977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7911558	0.96[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7916460	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv508600	chr10:94115025-94231917	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94191000-94211400	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr10:94196000-94209600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr10:94200000-94214200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr10:94200600-94210600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:94201600-94214400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr10:94204600-94211400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr10:94204600-94211800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr10:94205200-94211800	Weak transcription	Placenta	Placenta
9	chr10:94205200-94212800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr10:94205200-94214400	Weak transcription	Right Ventricle	heart
11	chr10:94205600-94214400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:94205800-94214400	Weak transcription	Fetal Stomach	stomach
13	chr10:94205800-94221800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr10:94206000-94207800	Weak transcription	Fetal Intestine Small	intestine
15	chr10:94206000-94210000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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