Variant report

Variant	rs57936176
Chromosome Location	chr10:94207915-94207916
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10786047	0.83[ASN][1000 genomes]
rs10882066	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10882069	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10882070	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10882078	0.87[ASN][1000 genomes]
rs11186999	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11187000	0.80[ASN][1000 genomes]
rs11187003	0.83[ASN][1000 genomes]
rs11187004	0.83[ASN][1000 genomes]
rs11187013	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11187018	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11187034	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11187037	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11187079	0.81[ASN][1000 genomes]
rs11814555	0.83[ASN][1000 genomes]
rs12218329	0.87[ASN][1000 genomes]
rs12411517	0.84[ASN][1000 genomes]
rs12414433	0.81[ASN][1000 genomes]
rs12415807	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12416180	0.87[ASN][1000 genomes]
rs17107734	0.87[ASN][1000 genomes]
rs1999763	0.84[ASN][1000 genomes]
rs1999764	0.84[ASN][1000 genomes]
rs2421940	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35118791	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35973022	0.82[EUR][1000 genomes]
rs3758503	0.81[ASN][1000 genomes]
rs3758505	0.81[ASN][1000 genomes]
rs3781237	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4646954	0.82[ASN][1000 genomes]
rs4646958	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933231	0.83[ASN][1000 genomes]
rs4933232	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4933725	0.83[ASN][1000 genomes]
rs4933728	0.83[ASN][1000 genomes]
rs59415214	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6583815	0.83[ASN][1000 genomes]
rs6583820	0.98[ASN][1000 genomes]
rs7068618	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7075073	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7075851	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7079099	0.87[ASN][1000 genomes]
rs7087153	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7089987	0.87[ASN][1000 genomes]
rs7093437	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7895832	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7898114	0.86[ASN][1000 genomes]
rs7898862	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7900584	0.81[ASN][1000 genomes]
rs7910605	0.83[ASN][1000 genomes]
rs7916460	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv508600	chr10:94115025-94231917	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94191000-94211400	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr10:94196000-94209600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr10:94200000-94214200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr10:94200600-94210600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:94201600-94214400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr10:94204600-94211400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr10:94204600-94211800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr10:94205200-94211800	Weak transcription	Placenta	Placenta
9	chr10:94205200-94212800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr10:94205200-94214400	Weak transcription	Right Ventricle	heart
11	chr10:94205600-94214400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:94205800-94214400	Weak transcription	Fetal Stomach	stomach
13	chr10:94205800-94221800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr10:94206000-94210000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:94206200-94209200	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr10:94206200-94209200	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr10:94206200-94209400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr10:94206200-94211600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr10:94206200-94211800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr10:94206200-94212200	Weak transcription	HMEC	breast
21	chr10:94206200-94214200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr10:94206200-94214400	Weak transcription	K562	blood
23	chr10:94206400-94210200	Weak transcription	Lung	lung
24	chr10:94206400-94210400	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr10:94206400-94211400	Weak transcription	Stomach Smooth Muscle	stomach
26	chr10:94206400-94213200	Weak transcription	HUVEC	blood vessel
27	chr10:94206400-94214200	Weak transcription	Fetal Intestine Large	intestine
28	chr10:94206400-94214400	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr10:94206400-94222600	Weak transcription	HSMMtube	muscle
30	chr10:94206600-94210000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr10:94206600-94210600	Weak transcription	Liver	Liver
32	chr10:94206600-94212000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr10:94206600-94212000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr10:94206800-94209000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr10:94207000-94212200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr10:94207000-94212400	Weak transcription	Ovary	ovary
37	chr10:94207000-94214400	Weak transcription	Gastric	stomach
38	chr10:94207200-94214400	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr10:94207400-94209400	Weak transcription	Adipose Nuclei	Adipose
40	chr10:94207400-94210400	Weak transcription	Psoas Muscle	Psoas
41	chr10:94207600-94209200	Weak transcription	A549	lung
42	chr10:94207600-94213200	Weak transcription	Hela-S3	cervix
43	chr10:94207800-94208200	Strong transcription	Fetal Intestine Small	intestine
44	chr10:94207800-94209400	Weak transcription	Duodenum Mucosa	Duodenum
45	chr10:94207800-94211200	Weak transcription	Osteobl	bone
46	chr10:94207800-94211400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr10:94207800-94211600	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr10:94207800-94212000	Weak transcription	Primary B cells from peripheral blood	blood
49	chr10:94207800-94213400	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr10:94207800-94214000	Weak transcription	Left Ventricle	heart

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