Variant report

Variant	rs2421945
Chromosome Location	chr10:94331341-94331342
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94301008..94306280-chr10:94330329..94333980,6	MCF-7	breast:
2	chr10:94327650..94337583-chr10:94349444..94356782,22	K562	blood:
3	chr10:94300885..94308768-chr10:94330971..94336052,7	K562	blood:
4	chr10:94330286..94336827-chr10:94349891..94354260,15	K562	blood:
5	chr10:94330457..94332438-chr10:94448558..94451661,3	K562	blood:
6	chr10:94329944..94332046-chr10:94350652..94352961,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119912	Chromatin interaction
ENSG00000152804	Chromatin interaction
ENSG00000138160	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10509645	0.82[JPT][hapmap]
rs10786049	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10882074	0.82[JPT][hapmap]
rs10882081	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11187033	0.82[JPT][hapmap]
rs11187046	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11187060	0.88[ASW][hapmap];0.84[CEU][hapmap];0.90[GIH][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];0.85[TSI][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs11187078	0.89[CHB][hapmap]
rs1832197	0.87[GIH][hapmap];0.89[MKK][hapmap]
rs2421943	0.82[JPT][hapmap]
rs2798253	0.82[JPT][hapmap]
rs4304670	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4646957	0.89[ASN][1000 genomes]
rs6583823	0.82[ASN][1000 genomes]
rs7078413	0.85[GIH][hapmap]
rs7092468	0.85[ASN][1000 genomes]
rs7099761	0.89[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs7899603	0.89[ASN][1000 genomes]
rs7905037	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	esv1792868	chr10:94232247-94409749	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv895894	chr10:94249982-94452430	Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv895895	chr10:94304132-94372706	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94272200-94332000	Weak transcription	Rectal Smooth Muscle	rectum
2	chr10:94272200-94332200	Weak transcription	Gastric	stomach
3	chr10:94277800-94332200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr10:94304600-94331400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr10:94314200-94331400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr10:94314200-94331400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr10:94314200-94331600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr10:94314200-94332000	Weak transcription	Colonic Mucosa	Colon
9	chr10:94314400-94331600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr10:94314400-94332200	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr10:94314400-94332400	Weak transcription	Aorta	Aorta
12	chr10:94314400-94332400	Weak transcription	Lung	lung
13	chr10:94316600-94331400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr10:94317600-94332200	Weak transcription	Fetal Thymus	thymus
15	chr10:94318000-94332000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr10:94319400-94331600	Weak transcription	HSMMtube	muscle
17	chr10:94319400-94332200	Weak transcription	Fetal Kidney	kidney
18	chr10:94319800-94332000	Weak transcription	Brain Germinal Matrix	brain
19	chr10:94320200-94331800	Weak transcription	Brain Hippocampus Middle	brain
20	chr10:94320400-94331400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr10:94320400-94331400	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr10:94320400-94331400	Weak transcription	Adipose Nuclei	Adipose
23	chr10:94320400-94331400	Weak transcription	Liver	Liver
24	chr10:94320400-94331400	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr10:94320400-94332000	Weak transcription	Placenta	Placenta
26	chr10:94320400-94332200	Weak transcription	Primary B cells from cord blood	blood
27	chr10:94320400-94332200	Weak transcription	Primary hematopoietic stem cells	blood
28	chr10:94320400-94332200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr10:94320600-94331400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr10:94320600-94331400	Weak transcription	Stomach Smooth Muscle	stomach
31	chr10:94320800-94331400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr10:94320800-94331400	Weak transcription	Fetal Intestine Large	intestine
33	chr10:94320800-94331600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr10:94320800-94331600	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr10:94320800-94331600	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr10:94320800-94332000	Weak transcription	Fetal Muscle Leg	muscle
37	chr10:94320800-94332000	Weak transcription	HSMM	muscle
38	chr10:94320800-94332200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr10:94320800-94332200	Weak transcription	Spleen	Spleen
40	chr10:94320800-94332400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr10:94320800-94332400	Weak transcription	Fetal Muscle Trunk	muscle
42	chr10:94320800-94332600	Weak transcription	Fetal Stomach	stomach
43	chr10:94321000-94332400	Weak transcription	Fetal Intestine Small	intestine
44	chr10:94322600-94331400	Weak transcription	Primary T cells from cord blood	blood
45	chr10:94323000-94332000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr10:94325800-94331400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr10:94326000-94332000	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr10:94326200-94331400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr10:94326400-94332000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr10:94327000-94331600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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