Variant report

Variant	rs2421943
Chromosome Location	chr10:94311815-94311816
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94309422..94311944-chr10:94332060..94335021,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119912	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1044153	0.81[ASN][1000 genomes]
rs10509645	0.95[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10786048	0.86[ASN][1000 genomes]
rs10882067	0.83[ASN][1000 genomes]
rs10882071	0.86[ASN][1000 genomes]
rs10882072	0.84[ASN][1000 genomes]
rs10882074	0.95[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10882083	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10882085	0.85[ASN][1000 genomes]
rs10882092	0.83[ASN][1000 genomes]
rs10882095	0.94[CHB][hapmap];0.90[JPT][hapmap];0.91[YRI][hapmap];0.83[ASN][1000 genomes]
rs10882096	1.00[YRI][hapmap]
rs10882099	0.81[CHB][hapmap]
rs11187022	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11187030	0.86[ASN][1000 genomes]
rs11187033	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11187072	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11187078	0.80[CEU][hapmap];0.87[JPT][hapmap];0.92[ASN][1000 genomes]
rs11187090	0.85[ASN][1000 genomes]
rs11187096	1.00[CHB][hapmap];0.91[JPT][hapmap];0.82[YRI][hapmap];0.85[ASN][1000 genomes]
rs11187098	0.81[ASN][1000 genomes]
rs11187099	0.83[ASN][1000 genomes]
rs11187107	0.83[ASN][1000 genomes]
rs11187114	0.95[CHB][hapmap];0.89[JPT][hapmap];0.90[YRI][hapmap];0.82[ASN][1000 genomes]
rs12220493	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12355158	0.84[ASN][1000 genomes]
rs1573051	0.84[ASN][1000 genomes]
rs1972360	0.83[ASN][1000 genomes]
rs2149632	0.84[ASN][1000 genomes]
rs2421945	0.82[JPT][hapmap]
rs2798253	0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2901597	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3781241	0.84[ASN][1000 genomes]
rs3824735	0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs4304670	0.82[JPT][hapmap]
rs61875362	0.84[ASN][1000 genomes]
rs6583813	0.84[ASN][1000 genomes]
rs6583823	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6583825	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7073833	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7076966	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7078418	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7099761	0.88[CEU][hapmap];0.81[JPT][hapmap];0.88[TSI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7900991	0.84[EUR][1000 genomes]
rs7905037	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7921210	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7921325	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	esv1792868	chr10:94232247-94409749	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv895894	chr10:94249982-94452430	Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv895895	chr10:94304132-94372706	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94250200-94313800	Weak transcription	Brain Substantia Nigra	brain
2	chr10:94267600-94314000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:94267800-94328800	Weak transcription	Fetal Heart	heart
4	chr10:94268000-94313800	Weak transcription	Colon Smooth Muscle	Colon
5	chr10:94268000-94313800	Weak transcription	NHLF	lung
6	chr10:94269400-94314000	Weak transcription	Aorta	Aorta
7	chr10:94269600-94314000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr10:94272000-94317200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr10:94272200-94313800	Weak transcription	HSMMtube	muscle
10	chr10:94272200-94332000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr10:94272200-94332200	Weak transcription	Gastric	stomach
12	chr10:94272400-94313600	Weak transcription	Brain Hippocampus Middle	brain
13	chr10:94272800-94313200	Weak transcription	Fetal Brain Female	brain
14	chr10:94277200-94313800	Weak transcription	Brain Angular Gyrus	brain
15	chr10:94277200-94331200	Weak transcription	Stomach Mucosa	stomach
16	chr10:94277800-94332200	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr10:94289600-94313200	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr10:94290400-94318800	Weak transcription	Right Ventricle	heart
19	chr10:94290800-94313800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr10:94291400-94313800	Weak transcription	HSMM	muscle
21	chr10:94292800-94313800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr10:94294000-94313400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr10:94294400-94313800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr10:94294600-94313800	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr10:94294800-94313600	Weak transcription	NHDF-Ad	bronchial
26	chr10:94295000-94313400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr10:94295400-94318000	Weak transcription	NH-A	brain
28	chr10:94295600-94313400	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr10:94295600-94313600	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr10:94295600-94313800	Weak transcription	Thymus	Thymus
31	chr10:94295600-94313800	Weak transcription	Osteobl	bone
32	chr10:94295600-94318600	Weak transcription	Fetal Kidney	kidney
33	chr10:94295800-94313800	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr10:94295800-94313800	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr10:94295800-94313800	Weak transcription	Small Intestine	intestine
36	chr10:94296000-94313200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr10:94296000-94313400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr10:94296000-94313400	Weak transcription	Fetal Muscle Leg	muscle
39	chr10:94296000-94313600	Weak transcription	Duodenum Mucosa	Duodenum
40	chr10:94296000-94313600	Weak transcription	Stomach Smooth Muscle	stomach
41	chr10:94296000-94313800	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr10:94296000-94314000	Weak transcription	Fetal Intestine Large	intestine
43	chr10:94296000-94314000	Weak transcription	Lung	lung
44	chr10:94296400-94313600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr10:94297400-94313800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr10:94297800-94313600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr10:94298000-94313800	Weak transcription	Left Ventricle	heart
48	chr10:94298000-94314000	Weak transcription	Esophagus	oesophagus
49	chr10:94298000-94314000	Weak transcription	Pancreas	Pancrea
50	chr10:94298400-94313600	Weak transcription	Brain Anterior Caudate	brain

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