Variant report

Variant	rs7900991
Chromosome Location	chr10:94338231-94338232
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10882083	0.88[EUR][1000 genomes]
rs11187072	0.87[EUR][1000 genomes]
rs11187076	0.88[ASN][1000 genomes]
rs12220493	0.86[EUR][1000 genomes]
rs2421943	0.84[EUR][1000 genomes]
rs2901597	0.88[EUR][1000 genomes]
rs6583823	0.91[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs6583825	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7073833	0.85[EUR][1000 genomes]
rs7076966	0.86[EUR][1000 genomes]
rs7078418	0.82[EUR][1000 genomes]
rs7099761	0.92[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7905037	0.92[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7921210	0.87[EUR][1000 genomes]
rs7921325	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	esv1792868	chr10:94232247-94409749	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv895894	chr10:94249982-94452430	Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv895895	chr10:94304132-94372706	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94335000-94339600	Weak transcription	Brain Angular Gyrus	brain
2	chr10:94335200-94338800	Weak transcription	Fetal Kidney	kidney
3	chr10:94336200-94350000	Weak transcription	HepG2	liver
4	chr10:94336400-94350400	Weak transcription	NHEK	skin
5	chr10:94336600-94341000	Weak transcription	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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