Variant report
Variant | rs2901597 |
---|---|
Chromosome Location | chr10:94342663-94342664 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr10:94341343..94347435-chr10:94348651..94352489,6 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1044153 | 0.88[ASN][1000 genomes] |
rs10509645 | 0.83[ASN][1000 genomes] |
rs10786048 | 0.83[ASN][1000 genomes] |
rs10882067 | 0.80[ASN][1000 genomes] |
rs10882071 | 0.83[ASN][1000 genomes] |
rs10882072 | 0.82[ASN][1000 genomes] |
rs10882074 | 0.85[ASN][1000 genomes] |
rs10882083 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs10882085 | 0.92[ASN][1000 genomes] |
rs10882092 | 0.90[ASN][1000 genomes] |
rs10882095 | 0.90[ASN][1000 genomes] |
rs10882096 | 0.86[ASN][1000 genomes] |
rs11187022 | 0.83[ASN][1000 genomes] |
rs11187030 | 0.83[ASN][1000 genomes] |
rs11187033 | 0.83[ASN][1000 genomes] |
rs11187072 | 0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs11187078 | 1.00[ASN][1000 genomes] |
rs11187090 | 0.92[ASN][1000 genomes] |
rs11187096 | 0.92[ASN][1000 genomes] |
rs11187098 | 0.88[ASN][1000 genomes] |
rs11187099 | 0.90[ASN][1000 genomes] |
rs11187107 | 0.90[ASN][1000 genomes] |
rs11187114 | 0.89[ASN][1000 genomes] |
rs12220493 | 0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs12355158 | 0.91[ASN][1000 genomes] |
rs1573051 | 0.92[ASN][1000 genomes] |
rs1972360 | 0.90[ASN][1000 genomes] |
rs2149632 | 0.82[ASN][1000 genomes] |
rs2421943 | 0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs2798253 | 0.82[ASN][1000 genomes] |
rs3781241 | 0.82[ASN][1000 genomes] |
rs3824735 | 0.92[ASN][1000 genomes] |
rs61875362 | 0.82[ASN][1000 genomes] |
rs6583813 | 0.82[ASN][1000 genomes] |
rs6583823 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs6583825 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs7073833 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs7076966 | 0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs7078418 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs7099761 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs7900991 | 0.88[EUR][1000 genomes] |
rs7905037 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs7921210 | 0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs7921325 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1046258 | chr10:93866969-94466106 | Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 58 gene(s) | inside rSNPs | diseases |
2 | esv1792868 | chr10:94232247-94409749 | Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 31 gene(s) | inside rSNPs | diseases |
3 | nsv895894 | chr10:94249982-94452430 | Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 40 gene(s) | inside rSNPs | diseases |
4 | nsv895895 | chr10:94304132-94372706 | Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 29 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr10:94336200-94350000 | Weak transcription | HepG2 | liver |
2 | chr10:94336400-94350400 | Weak transcription | NHEK | skin |