Variant report

Variant	rs11187107
Chromosome Location	chr10:94391697-94391698
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1044153	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10509645	0.85[EUR][1000 genomes]
rs10882071	0.80[EUR][1000 genomes]
rs10882072	0.80[EUR][1000 genomes]
rs10882074	0.85[EUR][1000 genomes]
rs10882083	0.84[ASN][1000 genomes]
rs10882085	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10882092	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882095	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882096	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11187033	0.80[EUR][1000 genomes]
rs11187072	0.84[ASN][1000 genomes]
rs11187078	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11187090	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11187096	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11187098	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11187099	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11187114	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11187117	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12220493	0.84[ASN][1000 genomes]
rs12355158	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1573051	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1972360	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2153827	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2421943	0.83[ASN][1000 genomes]
rs2901597	0.90[ASN][1000 genomes]
rs35978445	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3824735	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7073833	0.83[ASN][1000 genomes]
rs7076966	0.84[ASN][1000 genomes]
rs7077418	0.82[EUR][1000 genomes]
rs7078418	0.82[ASN][1000 genomes]
rs7921210	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	esv1792868	chr10:94232247-94409749	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv895894	chr10:94249982-94452430	Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	esv3446249	chr10:94374508-94549394	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94353600-94403800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:94354000-94420000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr10:94354200-94416000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:94362000-94399800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:94363600-94410200	Weak transcription	Fetal Kidney	kidney
6	chr10:94364000-94416400	Strong transcription	Dnd41	blood
7	chr10:94364200-94417400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr10:94364400-94403800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:94364400-94415200	Weak transcription	Fetal Heart	heart
10	chr10:94365000-94395200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr10:94365600-94415600	Strong transcription	Fetal Thymus	thymus
12	chr10:94366000-94409600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr10:94367200-94411400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr10:94367400-94394000	Weak transcription	Fetal Intestine Large	intestine
15	chr10:94367400-94399600	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr10:94371000-94408600	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr10:94371000-94414600	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr10:94371000-94417000	Weak transcription	Primary B cells from cord blood	blood
19	chr10:94371800-94408800	Weak transcription	Fetal Brain Female	brain
20	chr10:94373600-94399800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr10:94374800-94393000	Weak transcription	NHEK	skin
22	chr10:94374800-94410400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr10:94374800-94416000	Weak transcription	Placenta	Placenta
24	chr10:94374800-94418600	Weak transcription	Brain Germinal Matrix	brain
25	chr10:94375000-94391800	Weak transcription	NH-A	brain
26	chr10:94376200-94403600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr10:94379400-94401400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr10:94381400-94395000	Weak transcription	NHDF-Ad	bronchial
29	chr10:94382000-94396000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr10:94382000-94399000	Weak transcription	Fetal Intestine Small	intestine
31	chr10:94383000-94394400	Weak transcription	K562	blood
32	chr10:94383000-94414600	Weak transcription	Duodenum Mucosa	Duodenum
33	chr10:94384000-94414200	Weak transcription	Primary T cells from cord blood	blood
34	chr10:94384000-94416400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr10:94384400-94391800	Weak transcription	HepG2	liver
36	chr10:94384400-94403800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr10:94384800-94394000	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr10:94385800-94392000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr10:94386400-94393200	Weak transcription	HSMM	muscle
40	chr10:94387400-94396200	Strong transcription	Cortex derived primary cultured neurospheres	brain
41	chr10:94388200-94395000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr10:94388800-94392200	Strong transcription	Fetal Stomach	stomach
43	chr10:94389000-94416400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr10:94389400-94392600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr10:94389800-94404800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr10:94390000-94392000	Weak transcription	GM12878-XiMat	blood
47	chr10:94390000-94394000	Weak transcription	Fetal Muscle Trunk	muscle
48	chr10:94390000-94397000	Weak transcription	HMEC	breast
49	chr10:94390000-94403800	Weak transcription	NHLF	lung
50	chr10:94390200-94395200	Weak transcription	Primary hematopoietic stem cells	blood

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