Variant report

Variant	rs7077418
Chromosome Location	chr10:94295798-94295799
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1044153	0.83[EUR][1000 genomes]
rs10882067	0.80[AFR][1000 genomes]
rs10882085	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10882092	0.83[EUR][1000 genomes]
rs10882095	0.83[EUR][1000 genomes]
rs10882096	0.83[EUR][1000 genomes]
rs11187078	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11187090	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11187096	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11187098	0.82[EUR][1000 genomes]
rs11187099	0.83[EUR][1000 genomes]
rs11187107	0.82[EUR][1000 genomes]
rs11187114	0.83[EUR][1000 genomes]
rs11187117	0.80[EUR][1000 genomes]
rs12355158	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1573051	0.83[EUR][1000 genomes]
rs1972360	0.82[EUR][1000 genomes]
rs3824735	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	esv1792868	chr10:94232247-94409749	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv895894	chr10:94249982-94452430	Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94244000-94303000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:94250200-94297200	Weak transcription	Brain Germinal Matrix	brain
3	chr10:94250200-94313800	Weak transcription	Brain Substantia Nigra	brain
4	chr10:94250400-94301000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr10:94250400-94307400	Weak transcription	Spleen	Spleen
6	chr10:94252600-94302200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:94260000-94296800	Weak transcription	Esophagus	oesophagus
8	chr10:94262000-94297600	Weak transcription	Psoas Muscle	Psoas
9	chr10:94262000-94307400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:94267600-94297400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr10:94267600-94314000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:94267800-94328800	Weak transcription	Fetal Heart	heart
13	chr10:94268000-94313800	Weak transcription	Colon Smooth Muscle	Colon
14	chr10:94268000-94313800	Weak transcription	NHLF	lung
15	chr10:94268600-94300000	Weak transcription	Colonic Mucosa	Colon
16	chr10:94269400-94314000	Weak transcription	Aorta	Aorta
17	chr10:94269600-94314000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr10:94272000-94317200	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr10:94272200-94298600	Weak transcription	Brain Cingulate Gyrus	brain
20	chr10:94272200-94313800	Weak transcription	HSMMtube	muscle
21	chr10:94272200-94332000	Weak transcription	Rectal Smooth Muscle	rectum
22	chr10:94272200-94332200	Weak transcription	Gastric	stomach
23	chr10:94272400-94313600	Weak transcription	Brain Hippocampus Middle	brain
24	chr10:94272800-94313200	Weak transcription	Fetal Brain Female	brain
25	chr10:94274400-94303400	Weak transcription	HMEC	breast
26	chr10:94276800-94304000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr10:94277000-94304000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr10:94277200-94298000	Weak transcription	Brain Anterior Caudate	brain
29	chr10:94277200-94303000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr10:94277200-94304000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr10:94277200-94313800	Weak transcription	Brain Angular Gyrus	brain
32	chr10:94277200-94331200	Weak transcription	Stomach Mucosa	stomach
33	chr10:94277400-94304200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr10:94277800-94332200	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr10:94283400-94297400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr10:94286200-94297600	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr10:94286400-94298200	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr10:94287200-94303600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr10:94287400-94295800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr10:94287400-94298600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr10:94287800-94296000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr10:94287800-94297200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
43	chr10:94287800-94297400	Strong transcription	HUES64 Cell Line	embryonic stem cell
44	chr10:94288000-94296000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr10:94288000-94296200	Strong transcription	HUES48 Cell Line	embryonic stem cell
46	chr10:94288200-94296200	Strong transcription	Adipose Nuclei	Adipose
47	chr10:94288400-94295800	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr10:94288400-94296200	Strong transcription	HUES6 Cell Line	embryonic stem cell
49	chr10:94288800-94295800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr10:94288800-94295800	Strong transcription	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links