Variant report

Variant	rs11187096
Chromosome Location	chr10:94369588-94369589
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94351172..94353597-chr10:94367724..94369718,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138160	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1044153	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10509645	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes]
rs10882067	0.80[EUR][1000 genomes]
rs10882071	0.81[EUR][1000 genomes]
rs10882072	0.81[EUR][1000 genomes]
rs10882074	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes]
rs10882083	0.87[ASN][1000 genomes]
rs10882085	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882092	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10882095	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10882096	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882099	0.81[CHB][hapmap]
rs11187033	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes]
rs11187072	0.86[ASN][1000 genomes]
rs11187078	0.96[CEU][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11187090	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187098	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11187099	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11187107	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11187114	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11187117	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12220493	0.86[ASN][1000 genomes]
rs12355158	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1573051	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1972360	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2153827	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2421943	1.00[CHB][hapmap];0.91[JPT][hapmap];0.82[YRI][hapmap];0.85[ASN][1000 genomes]
rs2798253	0.96[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap]
rs2901597	0.92[ASN][1000 genomes]
rs35978445	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3824735	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7073833	0.85[ASN][1000 genomes]
rs7076966	0.87[ASN][1000 genomes]
rs7077418	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7078418	0.84[ASN][1000 genomes]
rs7099761	0.81[JPT][hapmap]
rs7921210	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	esv1792868	chr10:94232247-94409749	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv895894	chr10:94249982-94452430	Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv895895	chr10:94304132-94372706	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94353600-94403800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:94354000-94372000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:94354000-94420000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr10:94354200-94416000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:94354800-94373400	Weak transcription	Fetal Intestine Small	intestine
6	chr10:94355000-94372200	Weak transcription	HSMM	muscle
7	chr10:94355200-94372000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr10:94356800-94385600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr10:94358600-94372200	Weak transcription	K562	blood
10	chr10:94361800-94372600	Weak transcription	NHEK	skin
11	chr10:94362000-94372600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr10:94362000-94372600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr10:94362000-94381200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr10:94362000-94389400	Weak transcription	NHLF	lung
15	chr10:94362000-94399800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:94362400-94371800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr10:94362600-94376400	Weak transcription	Fetal Lung	lung
18	chr10:94362800-94372200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr10:94363600-94410200	Weak transcription	Fetal Kidney	kidney
20	chr10:94364000-94390600	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr10:94364000-94416400	Strong transcription	Dnd41	blood
22	chr10:94364200-94417400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr10:94364400-94403800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr10:94364400-94415200	Weak transcription	Fetal Heart	heart
25	chr10:94364800-94383600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr10:94365000-94372000	Weak transcription	Thymus	Thymus
27	chr10:94365000-94385400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr10:94365000-94395200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr10:94365200-94371200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr10:94365200-94372200	Weak transcription	Primary hematopoietic stem cells	blood
31	chr10:94365600-94379400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr10:94365600-94390600	Strong transcription	HUES48 Cell Line	embryonic stem cell
33	chr10:94365600-94415600	Strong transcription	Fetal Thymus	thymus
34	chr10:94365800-94370000	Strong transcription	HepG2	liver
35	chr10:94365800-94382600	Weak transcription	Duodenum Mucosa	Duodenum
36	chr10:94365800-94390400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
37	chr10:94366000-94370000	Strong transcription	Fetal Muscle Leg	muscle
38	chr10:94366000-94370400	Strong transcription	HUES6 Cell Line	embryonic stem cell
39	chr10:94366000-94370400	Strong transcription	A549	lung
40	chr10:94366000-94370800	Strong transcription	H1 Cell Line	embryonic stem cell
41	chr10:94366000-94386400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr10:94366000-94390600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
43	chr10:94366000-94409600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr10:94366200-94390600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr10:94366400-94388600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr10:94366600-94369800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr10:94366800-94370800	Strong transcription	Hela-S3	cervix
48	chr10:94366800-94390600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
49	chr10:94367200-94411400	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr10:94367400-94372400	Weak transcription	Placenta	Placenta

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