Variant report

Variant	rs10882099
Chromosome Location	chr10:94460650-94460651
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:94459665..94462220-chr10:94463826..94467337,3	K562	blood:
2	chr10:94455458..94457968-chr10:94458625..94460988,4	K562	blood:
3	chr10:94459361..94461445-chr10:94514300..94516299,2	K562	blood:
4	chr10:94460041..94464293-chr10:94516357..94518364,3	K562	blood:
5	chr10:94460103..94462180-chr10:94468508..94470499,2	K562	blood:
6	chr10:94459652..94461340-chr10:94585180..94587731,2	K562	blood:
7	chr10:94459840..94462711-chr10:94586158..94587731,2	K562	blood:
8	chr10:94460041..94462879-chr10:94516559..94518364,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000201412	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10509645	0.85[CHB][hapmap]
rs10882095	0.84[CHB][hapmap]
rs10882098	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882101	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882102	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs1111875	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187033	0.85[CHB][hapmap]
rs11187096	0.81[CHB][hapmap]
rs11187114	0.84[CHB][hapmap]
rs11187138	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11187139	0.97[EUR][1000 genomes]
rs12219514	0.91[EUR][1000 genomes]
rs12778642	0.92[EUR][1000 genomes]
rs1977832	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1977833	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2421943	0.81[CHB][hapmap]
rs35906730	0.84[EUR][1000 genomes]
rs3824735	0.85[CHB][hapmap]
rs5015480	1.00[CEU][hapmap];0.89[GIH][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs7903302	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	esv3446249	chr10:94374508-94549394	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	esv1794949	chr10:94392728-94465559	Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv825517	chr10:94397149-94472509	Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv825518	chr10:94403446-94467700	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	nsv895896	chr10:94429526-94460650	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
7	nsv895897	chr10:94430068-94460650	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10882099	ROD1	trans	parietal	SCAN
rs10882099	KIF11	cis	cerebellum	SCAN

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94456200-94462600	Weak transcription	Gastric	stomach
2	chr10:94458200-94460800	Enhancers	HepG2	liver
3	chr10:94459600-94462200	Weak transcription	Pancreas	Pancrea
4	chr10:94459800-94461600	Flanking Active TSS	Dnd41	blood
5	chr10:94459800-94474000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:94460000-94460800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr10:94460000-94460800	Enhancers	Primary hematopoietic stem cells	blood
8	chr10:94460000-94461000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr10:94460000-94461000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr10:94460000-94463000	Enhancers	Primary B cells from peripheral blood	blood
11	chr10:94460200-94460800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr10:94460200-94460800	Enhancers	HUVEC	blood vessel
13	chr10:94460200-94461000	Enhancers	A549	lung
14	chr10:94460200-94461600	Enhancers	K562	blood
15	chr10:94460200-94462000	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr10:94460200-94462000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr10:94460200-94462200	Weak transcription	Liver	Liver
18	chr10:94460200-94462600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr10:94460200-94463200	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr10:94460400-94460800	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr10:94460400-94460800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr10:94460400-94461400	Weak transcription	Primary B cells from cord blood	blood
23	chr10:94460600-94460800	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum
24	chr10:94460600-94461000	Weak transcription	Monocytes-CD14+_RO01746	blood

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