Variant report

Variant	rs10882102
Chromosome Location	chr10:94466495-94466496
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10882098	0.96[EUR][1000 genomes]
rs10882099	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs10882101	0.99[EUR][1000 genomes]
rs1111875	0.98[EUR][1000 genomes]
rs11187138	0.99[EUR][1000 genomes]
rs11187139	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187141	0.80[ASN][1000 genomes]
rs11187144	0.88[AFR][1000 genomes]
rs12219514	0.86[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs12778642	0.93[EUR][1000 genomes]
rs1977832	0.98[EUR][1000 genomes]
rs1977833	0.98[EUR][1000 genomes]
rs35906730	0.82[EUR][1000 genomes]
rs5015480	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6583826	0.83[JPT][hapmap]
rs7087591	0.81[CHB][hapmap];0.92[JPT][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes]
rs7903302	0.83[EUR][1000 genomes]
rs7923837	0.83[JPT][hapmap]
rs7923866	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446249	chr10:94374508-94549394	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv825517	chr10:94397149-94472509	Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv825518	chr10:94403446-94467700	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94459800-94474000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:94462400-94473400	Weak transcription	Sigmoid Colon	Sigmoid Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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