Variant report

Variant	rs10882071
Chromosome Location	chr10:94260105-94260106
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr10:94260104-94260275	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94251458..94254176-chr10:94257823..94260134,2	MCF-7	breast:

Variant related genes	Relation type
IDE	TF binding region

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1044153	0.81[EUR][1000 genomes]
rs10509645	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786048	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882067	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882072	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10882074	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10882083	0.87[ASN][1000 genomes]
rs10882085	0.81[EUR][1000 genomes]
rs10882092	0.81[EUR][1000 genomes]
rs10882095	0.81[EUR][1000 genomes]
rs10882096	0.81[EUR][1000 genomes]
rs11187007	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11187022	1.00[ASN][1000 genomes]
rs11187030	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187033	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187072	0.87[ASN][1000 genomes]
rs11187078	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11187090	0.81[EUR][1000 genomes]
rs11187096	0.81[EUR][1000 genomes]
rs11187099	0.81[EUR][1000 genomes]
rs11187107	0.80[EUR][1000 genomes]
rs11187114	0.81[EUR][1000 genomes]
rs12220493	0.87[ASN][1000 genomes]
rs1573051	0.81[EUR][1000 genomes]
rs1972360	0.80[EUR][1000 genomes]
rs2149632	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2421943	0.86[ASN][1000 genomes]
rs2798253	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2901597	0.83[ASN][1000 genomes]
rs3781241	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3824735	0.82[EUR][1000 genomes]
rs61875362	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6583813	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7073833	0.89[ASN][1000 genomes]
rs7076966	0.87[ASN][1000 genomes]
rs7078418	0.85[ASN][1000 genomes]
rs7921210	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv551924	chr10:94212742-94290484	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv551925	chr10:94224165-94288429	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv1802816	chr10:94232247-94294291	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	esv1792868	chr10:94232247-94409749	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
6	nsv895894	chr10:94249982-94452430	Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94208400-94276800	Weak transcription	Stomach Mucosa	stomach
2	chr10:94212800-94270400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:94217600-94270200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr10:94230000-94276400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr10:94230400-94276400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr10:94239600-94280400	Weak transcription	Fetal Brain Male	brain
7	chr10:94240200-94265400	Weak transcription	Fetal Heart	heart
8	chr10:94244000-94303000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr10:94248400-94268200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr10:94250000-94272400	Weak transcription	Fetal Brain Female	brain
11	chr10:94250200-94261800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:94250200-94263400	Weak transcription	Primary hematopoietic stem cells	blood
13	chr10:94250200-94265200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr10:94250200-94267000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr10:94250200-94267000	Weak transcription	NHLF	lung
16	chr10:94250200-94267400	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr10:94250200-94267400	Weak transcription	Colonic Mucosa	Colon
18	chr10:94250200-94267600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr10:94250200-94267600	Weak transcription	Gastric	stomach
20	chr10:94250200-94267600	Weak transcription	NHDF-Ad	bronchial
21	chr10:94250200-94267800	Weak transcription	Brain Hippocampus Middle	brain
22	chr10:94250200-94271400	Weak transcription	Brain Angular Gyrus	brain
23	chr10:94250200-94289400	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr10:94250200-94295200	Weak transcription	Pancreas	Pancrea
25	chr10:94250200-94297200	Weak transcription	Brain Germinal Matrix	brain
26	chr10:94250200-94313800	Weak transcription	Brain Substantia Nigra	brain
27	chr10:94250400-94260200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr10:94250400-94263200	Weak transcription	Small Intestine	intestine
29	chr10:94250400-94264800	Weak transcription	Osteobl	bone
30	chr10:94250400-94267000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr10:94250400-94267400	Weak transcription	Ovary	ovary
32	chr10:94250400-94267400	Weak transcription	HSMM	muscle
33	chr10:94250400-94268400	Weak transcription	Aorta	Aorta
34	chr10:94250400-94269000	Weak transcription	Thymus	Thymus
35	chr10:94250400-94271200	Weak transcription	K562	blood
36	chr10:94250400-94271400	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr10:94250400-94271600	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr10:94250400-94272000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr10:94250400-94301000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr10:94250400-94307400	Weak transcription	Spleen	Spleen
41	chr10:94250600-94260800	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr10:94250600-94261200	Weak transcription	Psoas Muscle	Psoas
43	chr10:94250600-94265800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr10:94250600-94267000	Weak transcription	Fetal Lung	lung
45	chr10:94250600-94267000	Weak transcription	Fetal Muscle Trunk	muscle
46	chr10:94250600-94267200	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr10:94250600-94267400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr10:94250800-94261200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr10:94250800-94267000	Weak transcription	Colon Smooth Muscle	Colon
50	chr10:94250800-94267200	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links