Variant report

Variant	rs6583813
Chromosome Location	chr10:94209939-94209940
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10509645	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10786048	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10882067	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882071	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10882072	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10882074	0.94[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882083	0.86[ASN][1000 genomes]
rs10882095	0.89[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs10882096	0.87[CEU][hapmap]
rs11187007	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11187022	0.94[ASN][1000 genomes]
rs11187030	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11187033	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11187072	0.85[ASN][1000 genomes]
rs11187078	0.94[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs11187094	0.82[CHB][hapmap]
rs11187096	0.89[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap]
rs11187114	0.89[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap]
rs12220493	0.85[ASN][1000 genomes]
rs2149632	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2421943	0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2421945	0.81[JPT][hapmap]
rs2798253	0.94[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2901597	0.82[ASN][1000 genomes]
rs3781241	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3824735	0.88[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs4304670	0.82[JPT][hapmap]
rs61875362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7073833	0.87[ASN][1000 genomes]
rs7076966	0.86[ASN][1000 genomes]
rs7078418	0.84[ASN][1000 genomes]
rs7099761	0.87[CHB][hapmap];0.85[JPT][hapmap]
rs7921210	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv508600	chr10:94115025-94231917	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94191000-94211400	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr10:94200000-94214200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr10:94200600-94210600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:94201600-94214400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr10:94204600-94211400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:94204600-94211800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr10:94205200-94211800	Weak transcription	Placenta	Placenta
8	chr10:94205200-94212800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr10:94205200-94214400	Weak transcription	Right Ventricle	heart
10	chr10:94205600-94214400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr10:94205800-94214400	Weak transcription	Fetal Stomach	stomach
12	chr10:94205800-94221800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr10:94206000-94210000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr10:94206200-94211600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr10:94206200-94211800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:94206200-94212200	Weak transcription	HMEC	breast
17	chr10:94206200-94214200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr10:94206200-94214400	Weak transcription	K562	blood
19	chr10:94206400-94210200	Weak transcription	Lung	lung
20	chr10:94206400-94210400	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr10:94206400-94211400	Weak transcription	Stomach Smooth Muscle	stomach
22	chr10:94206400-94213200	Weak transcription	HUVEC	blood vessel
23	chr10:94206400-94214200	Weak transcription	Fetal Intestine Large	intestine
24	chr10:94206400-94214400	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr10:94206400-94222600	Weak transcription	HSMMtube	muscle
26	chr10:94206600-94210000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr10:94206600-94210600	Weak transcription	Liver	Liver
28	chr10:94206600-94212000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr10:94206600-94212000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr10:94207000-94212200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr10:94207000-94212400	Weak transcription	Ovary	ovary
32	chr10:94207000-94214400	Weak transcription	Gastric	stomach
33	chr10:94207200-94214400	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr10:94207400-94210400	Weak transcription	Psoas Muscle	Psoas
35	chr10:94207600-94213200	Weak transcription	Hela-S3	cervix
36	chr10:94207800-94211200	Weak transcription	Osteobl	bone
37	chr10:94207800-94211400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr10:94207800-94211600	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr10:94207800-94212000	Weak transcription	Primary B cells from peripheral blood	blood
40	chr10:94207800-94213400	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr10:94207800-94214000	Weak transcription	Left Ventricle	heart
42	chr10:94207800-94222000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr10:94208000-94210400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr10:94208000-94210600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr10:94208000-94211400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr10:94208000-94211400	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr10:94208000-94211400	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr10:94208000-94211800	Weak transcription	Primary T cells from cord blood	blood
49	chr10:94208000-94212000	Weak transcription	Primary B cells from cord blood	blood
50	chr10:94208000-94212000	Weak transcription	Dnd41	blood

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