Variant report

Variant	rs2798253
Chromosome Location	chr10:94202905-94202906
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10509645	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10786048	0.94[ASN][1000 genomes]
rs10882067	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882071	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10882072	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10882074	0.96[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10882083	0.86[ASN][1000 genomes]
rs10882095	0.92[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap]
rs10882096	0.90[CEU][hapmap]
rs11187007	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11187022	0.94[ASN][1000 genomes]
rs11187030	0.94[ASN][1000 genomes]
rs11187033	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11187072	0.85[ASN][1000 genomes]
rs11187078	0.96[CEU][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs11187096	0.96[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap]
rs12220493	0.85[ASN][1000 genomes]
rs2149632	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2421943	0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2421945	0.82[JPT][hapmap]
rs2901597	0.82[ASN][1000 genomes]
rs3781241	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3824735	0.91[CEU][hapmap];0.91[JPT][hapmap]
rs4304670	0.83[JPT][hapmap]
rs61875362	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583813	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7073833	0.87[ASN][1000 genomes]
rs7076966	0.86[ASN][1000 genomes]
rs7078418	0.84[ASN][1000 genomes]
rs7099761	0.81[JPT][hapmap]
rs7921210	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv508600	chr10:94115025-94231917	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	esv3425190	chr10:94202448-94205377	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94191000-94211400	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr10:94196000-94209600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr10:94200000-94214200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr10:94200600-94210600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:94201600-94214400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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