Variant report

Variant	rs11187078
Chromosome Location	chr10:94340705-94340706
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94332061..94333829-chr10:94339331..94341116,2	MCF-7	breast:
2	chr10:94334190..94336878-chr10:94340281..94341907,2	K562	blood:
3	chr10:94332010..94335466-chr10:94338922..94340860,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119912	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1044153	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10509645	1.00[CEU][hapmap];0.87[JPT][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10786048	0.83[ASN][1000 genomes]
rs10882067	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10882071	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10882072	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10882074	1.00[CEU][hapmap];0.87[JPT][hapmap];0.85[YRI][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10882083	0.94[ASN][1000 genomes]
rs10882085	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10882092	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10882095	0.96[CEU][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10882096	0.95[CEU][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11187007	0.83[EUR][1000 genomes]
rs11187022	0.83[ASN][1000 genomes]
rs11187030	0.83[ASN][1000 genomes]
rs11187033	1.00[CEU][hapmap];0.87[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11187072	0.93[ASN][1000 genomes]
rs11187090	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11187096	0.96[CEU][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11187098	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11187099	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11187107	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11187114	0.96[CEU][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11187117	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12220493	0.93[ASN][1000 genomes]
rs12355158	1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1573051	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1972360	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2149632	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2153827	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2421943	0.80[CEU][hapmap];0.87[JPT][hapmap];0.92[ASN][1000 genomes]
rs2421945	0.89[CHB][hapmap]
rs2798253	0.96[CEU][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs2901597	1.00[ASN][1000 genomes]
rs35978445	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3781241	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3824735	0.96[CEU][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4304670	0.90[CHB][hapmap]
rs61875362	0.82[ASN][1000 genomes]
rs6583813	0.82[ASN][1000 genomes]
rs6583823	0.85[ASN][1000 genomes]
rs6583825	0.84[ASN][1000 genomes]
rs7073833	0.92[ASN][1000 genomes]
rs7076966	0.94[ASN][1000 genomes]
rs7077418	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7078418	0.92[ASN][1000 genomes]
rs7099761	1.00[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs7905037	0.85[ASN][1000 genomes]
rs7921210	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	esv1792868	chr10:94232247-94409749	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv895894	chr10:94249982-94452430	Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv895895	chr10:94304132-94372706	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94336200-94350000	Weak transcription	HepG2	liver
2	chr10:94336400-94350400	Weak transcription	NHEK	skin
3	chr10:94336600-94341000	Weak transcription	Primary neutrophils fromperipheralblood	blood

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