Variant report

Variant	rs10882067
Chromosome Location	chr10:94244268-94244269
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1044153	0.80[EUR][1000 genomes]
rs10509645	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10786048	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882071	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882072	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10882074	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10882083	0.84[ASN][1000 genomes]
rs10882085	0.80[EUR][1000 genomes]
rs10882092	0.80[EUR][1000 genomes]
rs10882095	0.80[EUR][1000 genomes]
rs10882096	0.80[EUR][1000 genomes]
rs11187007	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11187022	0.97[ASN][1000 genomes]
rs11187030	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11187033	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11187072	0.84[ASN][1000 genomes]
rs11187078	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11187090	0.80[EUR][1000 genomes]
rs11187096	0.80[EUR][1000 genomes]
rs11187114	0.80[EUR][1000 genomes]
rs12220493	0.84[ASN][1000 genomes]
rs1573051	0.80[EUR][1000 genomes]
rs2149632	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2421943	0.83[ASN][1000 genomes]
rs2798253	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2901597	0.80[ASN][1000 genomes]
rs3781241	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3824735	0.81[EUR][1000 genomes]
rs61875362	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6583813	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7073833	0.86[ASN][1000 genomes]
rs7076966	0.84[ASN][1000 genomes]
rs7077418	0.80[AFR][1000 genomes]
rs7078418	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv551924	chr10:94212742-94290484	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv551925	chr10:94224165-94288429	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv1802816	chr10:94232247-94294291	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	esv1792868	chr10:94232247-94409749	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94208400-94276800	Weak transcription	Stomach Mucosa	stomach
2	chr10:94210600-94250000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr10:94211400-94253200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:94212800-94270400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr10:94217400-94251800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:94217600-94270200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr10:94217800-94245600	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr10:94218000-94245400	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr10:94218200-94251800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:94222800-94250800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr10:94223200-94252600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr10:94225400-94248800	Weak transcription	Brain Germinal Matrix	brain
13	chr10:94225600-94248400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr10:94225600-94252600	Weak transcription	Fetal Kidney	kidney
15	chr10:94226000-94245000	Weak transcription	K562	blood
16	chr10:94227400-94251200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:94229200-94246400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr10:94230000-94276400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr10:94230200-94246600	Weak transcription	Psoas Muscle	Psoas
20	chr10:94230200-94247800	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr10:94230400-94276400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr10:94230600-94249000	Weak transcription	NHLF	lung
23	chr10:94230600-94249400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr10:94232800-94251200	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr10:94233200-94251000	Strong transcription	Liver	Liver
26	chr10:94233200-94254000	Strong transcription	Adipose Nuclei	Adipose
27	chr10:94233600-94250600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr10:94233800-94251200	Strong transcription	Left Ventricle	heart
29	chr10:94235000-94245600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr10:94236400-94253000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr10:94236600-94251000	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr10:94236800-94248800	Weak transcription	Colon Smooth Muscle	Colon
33	chr10:94237200-94251200	Strong transcription	HUES64 Cell Line	embryonic stem cell
34	chr10:94237400-94250400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr10:94237800-94250400	Strong transcription	Skeletal Muscle Female	skeletal muscle
36	chr10:94237800-94251000	Strong transcription	Brain Anterior Caudate	brain
37	chr10:94238000-94254000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr10:94238400-94245400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr10:94238600-94247200	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr10:94239600-94244600	Weak transcription	Fetal Lung	lung
41	chr10:94239600-94246000	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr10:94239600-94248800	Weak transcription	NH-A	brain
43	chr10:94239600-94252400	Weak transcription	HMEC	breast
44	chr10:94239600-94280400	Weak transcription	Fetal Brain Male	brain
45	chr10:94239800-94248000	Weak transcription	HSMMtube	muscle
46	chr10:94240200-94265400	Weak transcription	Fetal Heart	heart
47	chr10:94240400-94246000	Weak transcription	HSMM	muscle
48	chr10:94240600-94245000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr10:94240600-94245400	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr10:94241000-94250600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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