Variant report

Variant	rs3781241
Chromosome Location	chr10:94216510-94216511
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10509645	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10786048	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10882067	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10882071	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10882072	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10882074	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882083	0.86[ASN][1000 genomes]
rs11187007	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11187022	0.95[ASN][1000 genomes]
rs11187030	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11187033	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11187072	0.85[ASN][1000 genomes]
rs11187078	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12220493	0.85[ASN][1000 genomes]
rs2149632	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2421943	0.84[ASN][1000 genomes]
rs2798253	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2901597	0.82[ASN][1000 genomes]
rs3824735	0.80[EUR][1000 genomes]
rs61875362	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6583813	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7073833	0.87[ASN][1000 genomes]
rs7076966	0.86[ASN][1000 genomes]
rs7078418	0.84[ASN][1000 genomes]
rs7092468	0.80[ASN][1000 genomes]
rs7921210	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv508600	chr10:94115025-94231917	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv551924	chr10:94212742-94290484	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94205800-94221800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:94206400-94222600	Weak transcription	HSMMtube	muscle
3	chr10:94207800-94222000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr10:94208000-94219800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr10:94208000-94222400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr10:94208000-94223600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr10:94208000-94224000	Weak transcription	Fetal Kidney	kidney
8	chr10:94208200-94216800	Weak transcription	Small Intestine	intestine
9	chr10:94208400-94219200	Weak transcription	Colon Smooth Muscle	Colon
10	chr10:94208400-94276800	Weak transcription	Stomach Mucosa	stomach
11	chr10:94208600-94217000	Weak transcription	NHEK	skin
12	chr10:94209000-94225800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:94209200-94216600	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr10:94209200-94217200	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr10:94209400-94218600	Weak transcription	Primary hematopoietic stem cells	blood
16	chr10:94209400-94225800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr10:94209400-94231400	Strong transcription	Duodenum Mucosa	Duodenum
18	chr10:94209800-94234400	Weak transcription	Fetal Heart	heart
19	chr10:94210000-94224200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr10:94210000-94224800	Weak transcription	Brain Germinal Matrix	brain
21	chr10:94210000-94243000	Weak transcription	Fetal Brain Female	brain
22	chr10:94210400-94231800	Strong transcription	Adipose Nuclei	Adipose
23	chr10:94210400-94235600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr10:94210400-94239200	Weak transcription	Fetal Brain Male	brain
25	chr10:94210600-94220200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr10:94210600-94221400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr10:94210600-94231800	Strong transcription	Liver	Liver
28	chr10:94210600-94250000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr10:94210800-94217400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr10:94210800-94218000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr10:94211000-94235600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr10:94211200-94225800	Strong transcription	Osteobl	bone
33	chr10:94211400-94217200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr10:94211400-94217600	Strong transcription	Skeletal Muscle Female	skeletal muscle
35	chr10:94211400-94218200	Strong transcription	Primary T cells fromperipheralblood	blood
36	chr10:94211400-94221400	Strong transcription	Rectal Mucosa Donor 31	rectum
37	chr10:94211400-94225800	Strong transcription	HUES6 Cell Line	embryonic stem cell
38	chr10:94211400-94231800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr10:94211400-94235600	Strong transcription	Primary T helper cells fromperipheralblood	blood
40	chr10:94211400-94235800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr10:94211400-94253200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr10:94211600-94218200	Strong transcription	Rectal Mucosa Donor 29	rectum
43	chr10:94211800-94216600	Strong transcription	Placenta	Placenta
44	chr10:94211800-94217800	Strong transcription	HSMM	muscle
45	chr10:94211800-94221200	Strong transcription	Primary T cells from cord blood	blood
46	chr10:94211800-94230600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr10:94212000-94217600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr10:94212000-94217800	Strong transcription	Primary B cells from cord blood	blood
49	chr10:94212000-94217800	Strong transcription	Dnd41	blood
50	chr10:94212000-94232400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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