Variant report

Variant	rs10882081
Chromosome Location	chr10:94315024-94315025
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10786049	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11187046	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11187060	0.93[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs2421945	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4304670	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4646957	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7092468	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7099761	0.81[ASN][1000 genomes]
rs7899603	0.90[ASN][1000 genomes]
rs7905037	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	esv1792868	chr10:94232247-94409749	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv895894	chr10:94249982-94452430	Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv895895	chr10:94304132-94372706	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94267800-94328800	Weak transcription	Fetal Heart	heart
2	chr10:94272000-94317200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr10:94272200-94332000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr10:94272200-94332200	Weak transcription	Gastric	stomach
5	chr10:94277200-94331200	Weak transcription	Stomach Mucosa	stomach
6	chr10:94277800-94332200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr10:94290400-94318800	Weak transcription	Right Ventricle	heart
8	chr10:94295400-94318000	Weak transcription	NH-A	brain
9	chr10:94295600-94318600	Weak transcription	Fetal Kidney	kidney
10	chr10:94298600-94318600	Weak transcription	Hela-S3	cervix
11	chr10:94304600-94318800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr10:94304600-94318800	Weak transcription	K562	blood
13	chr10:94304600-94331400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr10:94305400-94318800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr10:94305400-94323600	Weak transcription	HMEC	breast
16	chr10:94310200-94325000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr10:94312000-94316600	Weak transcription	HepG2	liver
18	chr10:94312800-94315400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr10:94312800-94315800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr10:94313200-94315600	ZNF genes & repeats	Fetal Brain Female	brain
21	chr10:94313400-94315200	ZNF genes & repeats	Fetal Muscle Leg	muscle
22	chr10:94313400-94315600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:94313600-94315200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
24	chr10:94313600-94315200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr10:94313600-94315200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr10:94313600-94315600	ZNF genes & repeats	GM12878-XiMat	blood
27	chr10:94313600-94315600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
28	chr10:94313800-94315200	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
29	chr10:94313800-94315200	ZNF genes & repeats	Fetal Lung	lung
30	chr10:94313800-94315600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr10:94313800-94315600	Strong transcription	A549	lung
32	chr10:94313800-94315600	Strong transcription	Osteobl	bone
33	chr10:94313800-94316200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr10:94313800-94327000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr10:94314000-94315200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr10:94314000-94315200	ZNF genes & repeats	Fetal Intestine Small	intestine
37	chr10:94314000-94315600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
38	chr10:94314000-94315600	Strong transcription	Muscle Satellite Cultured Cells	--
39	chr10:94314200-94315200	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr10:94314200-94315200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr10:94314200-94315200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr10:94314200-94315200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr10:94314200-94315200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr10:94314200-94315200	Strong transcription	Rectal Mucosa Donor 31	rectum
45	chr10:94314200-94315200	Strong transcription	Sigmoid Colon	Sigmoid Colon
46	chr10:94314200-94315400	Strong transcription	Fetal Muscle Trunk	muscle
47	chr10:94314200-94315600	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr10:94314200-94315600	Strong transcription	Primary T cells fromperipheralblood	blood
49	chr10:94314200-94315600	Strong transcription	Adipose Nuclei	Adipose
50	chr10:94314200-94316200	Strong transcription	Skeletal Muscle Female	skeletal muscle

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