Variant report

Variant	rs4646957
Chromosome Location	chr10:94229912-94229913
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10509645	0.82[JPT][hapmap]
rs10786049	0.91[ASN][1000 genomes]
rs10882074	0.82[JPT][hapmap]
rs10882081	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11187033	0.82[JPT][hapmap]
rs11187046	0.85[EUR][1000 genomes]
rs11187060	0.81[CEU][hapmap];0.89[GIH][hapmap];0.83[TSI][hapmap]
rs1832197	0.87[GIH][hapmap]
rs2421943	0.82[JPT][hapmap]
rs2421945	0.96[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap];0.89[ASN][1000 genomes]
rs2798253	0.82[JPT][hapmap]
rs4304670	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7078413	0.84[GIH][hapmap]
rs7092468	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7099761	0.87[CHD][hapmap];0.82[JPT][hapmap]
rs7899603	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv508600	chr10:94115025-94231917	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv551924	chr10:94212742-94290484	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv551925	chr10:94224165-94288429	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94208400-94276800	Weak transcription	Stomach Mucosa	stomach
2	chr10:94209400-94231400	Strong transcription	Duodenum Mucosa	Duodenum
3	chr10:94209800-94234400	Weak transcription	Fetal Heart	heart
4	chr10:94210000-94243000	Weak transcription	Fetal Brain Female	brain
5	chr10:94210400-94231800	Strong transcription	Adipose Nuclei	Adipose
6	chr10:94210400-94235600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr10:94210400-94239200	Weak transcription	Fetal Brain Male	brain
8	chr10:94210600-94231800	Strong transcription	Liver	Liver
9	chr10:94210600-94250000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr10:94211000-94235600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr10:94211400-94231800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr10:94211400-94235600	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr10:94211400-94235800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr10:94211400-94253200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr10:94211800-94230600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr10:94212000-94232400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:94212400-94233800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr10:94212800-94270400	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr10:94214200-94230400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr10:94214400-94234200	Strong transcription	Fetal Stomach	stomach
21	chr10:94217200-94232400	Weak transcription	Small Intestine	intestine
22	chr10:94217400-94251800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr10:94217600-94270200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr10:94217800-94230400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr10:94217800-94245600	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr10:94218000-94245400	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr10:94218200-94251800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr10:94218400-94230200	Strong transcription	Skeletal Muscle Female	skeletal muscle
29	chr10:94218400-94237800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr10:94218600-94230400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr10:94218600-94230400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr10:94219000-94231200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr10:94219200-94230200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr10:94219600-94230200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr10:94219600-94230200	Strong transcription	Left Ventricle	heart
36	chr10:94220000-94232000	Strong transcription	Primary T cells fromperipheralblood	blood
37	chr10:94220200-94230200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr10:94220200-94230200	Strong transcription	Fetal Muscle Leg	muscle
39	chr10:94220200-94231200	Strong transcription	Stomach Smooth Muscle	stomach
40	chr10:94221800-94230000	Strong transcription	Thymus	Thymus
41	chr10:94221800-94230200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr10:94222200-94230000	Strong transcription	Fetal Intestine Large	intestine
43	chr10:94222200-94230800	Strong transcription	Duodenum Smooth Muscle	Duodenum
44	chr10:94222400-94230000	Strong transcription	Fetal Muscle Trunk	muscle
45	chr10:94222400-94231400	Strong transcription	Primary T cells from cord blood	blood
46	chr10:94222600-94243200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr10:94222800-94250800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr10:94223200-94252600	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr10:94223400-94230200	Strong transcription	GM12878-XiMat	blood
50	chr10:94224600-94238800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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