Variant report

Variant	rs12218324
Chromosome Location	chr10:94359720-94359721
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94350490..94352733-chr10:94357545..94360225,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10882066	0.80[ASN][1000 genomes]
rs10882078	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10882086	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882088	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882093	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11186999	0.80[ASN][1000 genomes]
rs11187037	0.80[ASN][1000 genomes]
rs11187077	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11187079	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11187092	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187108	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11187115	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11595187	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12218329	0.87[ASN][1000 genomes]
rs12411517	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12411873	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12414433	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12415807	0.80[ASN][1000 genomes]
rs12416180	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17107734	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1999763	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1999764	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2275219	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2297743	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3758503	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3758505	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4646954	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4933232	0.80[ASN][1000 genomes]
rs4933728	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4933731	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933732	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7068118	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7075073	0.80[ASN][1000 genomes]
rs7075851	0.80[ASN][1000 genomes]
rs7079099	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7089987	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7093437	0.80[ASN][1000 genomes]
rs74151674	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7898114	0.86[ASN][1000 genomes]
rs7898862	0.80[ASN][1000 genomes]
rs7900584	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7916594	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	esv1792868	chr10:94232247-94409749	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv895894	chr10:94249982-94452430	Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv895895	chr10:94304132-94372706	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94353600-94403800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:94354000-94362000	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr10:94354000-94372000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:94354000-94420000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr10:94354200-94369000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr10:94354200-94416000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr10:94354600-94361400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr10:94354600-94361600	Weak transcription	Fetal Lung	lung
9	chr10:94354800-94361400	Weak transcription	HMEC	breast
10	chr10:94354800-94366000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr10:94354800-94366000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:94354800-94373400	Weak transcription	Fetal Intestine Small	intestine
13	chr10:94355000-94361200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr10:94355000-94364000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr10:94355000-94364000	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr10:94355000-94366000	Weak transcription	Fetal Muscle Leg	muscle
17	chr10:94355000-94368200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr10:94355000-94372200	Weak transcription	HSMM	muscle
19	chr10:94355200-94361800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr10:94355200-94372000	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr10:94355400-94365600	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr10:94355600-94361600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr10:94355600-94361600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr10:94355600-94362800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr10:94355600-94366000	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr10:94355600-94368400	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr10:94355800-94361200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr10:94355800-94369000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr10:94355800-94369200	Weak transcription	NH-A	brain
30	chr10:94355800-94369400	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr10:94356000-94367600	Weak transcription	Fetal Stomach	stomach
32	chr10:94356600-94361600	Weak transcription	Osteobl	bone
33	chr10:94356800-94361200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr10:94356800-94361400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr10:94356800-94361800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr10:94356800-94361800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr10:94356800-94366800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr10:94356800-94385600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr10:94357000-94360200	Weak transcription	Fetal Thymus	thymus
40	chr10:94357000-94361200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr10:94357000-94361200	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr10:94357000-94361200	Weak transcription	HUVEC	blood vessel
43	chr10:94357000-94361400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr10:94357000-94361400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr10:94357000-94361400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr10:94357000-94361400	Weak transcription	Thymus	Thymus
47	chr10:94357000-94361400	Weak transcription	NHEK	skin
48	chr10:94357000-94361400	Weak transcription	NHLF	lung
49	chr10:94357000-94361600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr10:94357000-94365800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links