Variant report
| Variant | rs10882654 |
|---|---|
| Chromosome Location | chr10:97468589-97468590 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs1053905 | 1.00[CHB][hapmap] |
| rs10786227 | 1.00[CHB][hapmap] |
| rs10882638 | 1.00[CHB][hapmap] |
| rs10882640 | 1.00[CHB][hapmap] |
| rs10882641 | 1.00[CHB][hapmap] |
| rs10882643 | 0.85[CHB][hapmap] |
| rs10882644 | 0.85[CHB][hapmap] |
| rs10882649 | 0.85[CHB][hapmap] |
| rs11188397 | 1.00[CHB][hapmap] |
| rs11188398 | 0.85[CHB][hapmap] |
| rs11188399 | 1.00[CHB][hapmap] |
| rs11188407 | 0.85[CHB][hapmap] |
| rs11188411 | 0.85[CHB][hapmap] |
| rs11188417 | 0.85[CHB][hapmap] |
| rs11188423 | 0.89[JPT][hapmap] |
| rs11188433 | 0.82[CHD][hapmap];0.89[JPT][hapmap] |
| rs11188444 | 0.82[CHB][hapmap] |
| rs11188502 | 1.00[JPT][hapmap] |
| rs12359343 | 0.85[CHB][hapmap] |
| rs12778814 | 1.00[CHB][hapmap] |
| rs12784530 | 0.89[JPT][hapmap] |
| rs1409709 | 1.00[CHB][hapmap] |
| rs17461546 | 0.85[CHB][hapmap] |
| rs2282305 | 0.89[JPT][hapmap] |
| rs2296689 | 1.00[CHB][hapmap] |
| rs2296691 | 0.85[CHB][hapmap] |
| rs2296692 | 1.00[CHB][hapmap] |
| rs4037 | 0.85[CHB][hapmap] |
| rs4258314 | 0.85[CHB][hapmap] |
| rs4917702 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4917703 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7100377 | 0.86[ASW][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.85[LWK][hapmap] |
| rs749050 | 0.85[CHB][hapmap] |
| rs7895056 | 0.85[CHB][hapmap] |
| rs943342 | 1.00[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv526180 | chr10:97332195-97511037 | Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv531923 | chr10:97366055-97725757 | Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:6)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs10882654 | ENTPD1 | cis | lymphoblastoid | seeQTL |
| rs10882654 | CC2D2B | cis | cerebellum | SCAN |
| rs10882654 | ENTPD1 | Cis_1M | lymphoblastoid | RTeQTL |
| rs10882654 | ENTPD1 | cis | multi-tissue | Pritchard |
| rs10882654 | ENTPD1 | cis | Lymphoblastoid | GTEx |
| rs10882654 | PDE6C | cis | cerebellum | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:97458800-97481400 | Weak transcription | Primary B cells from cord blood | blood |
