Variant report

Variant	rs10882641
Chromosome Location	chr10:97371903-97371904
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1053905	0.91[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.84[MEX][hapmap];0.90[MKK][hapmap];0.86[YRI][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786226	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786227	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882638	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882640	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882643	0.85[CHB][hapmap]
rs10882644	0.85[CHB][hapmap]
rs10882649	0.85[CHB][hapmap]
rs10882654	1.00[CHB][hapmap]
rs11188397	0.91[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.84[MEX][hapmap];0.90[MKK][hapmap];0.86[YRI][hapmap];0.91[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11188398	0.85[CHB][hapmap]
rs11188399	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188407	0.85[CHB][hapmap]
rs11188411	0.85[CHB][hapmap]
rs11188417	0.85[CHB][hapmap]
rs11188444	0.82[CHB][hapmap]
rs12778814	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12780161	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1409709	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17461546	0.85[CHB][hapmap]
rs2296689	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2296691	0.85[CHB][hapmap]
rs2296692	0.91[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.84[MEX][hapmap];0.90[MKK][hapmap];0.86[YRI][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4037	0.85[CHB][hapmap]
rs4258314	0.85[CHB][hapmap]
rs533383	0.81[ASW][hapmap];0.84[MEX][hapmap]
rs58419111	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7099284	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7100377	0.86[CHB][hapmap];0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs749050	0.85[CHB][hapmap]
rs7905711	0.85[ASN][1000 genomes]
rs943342	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs943343	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97335200-97373400	Weak transcription	Psoas Muscle	Psoas
2	chr10:97364000-97382000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr10:97364000-97409200	Strong transcription	Primary T cells from cord blood	blood
4	chr10:97364000-97411000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr10:97364200-97372000	Strong transcription	Fetal Intestine Large	intestine
6	chr10:97364400-97373200	Strong transcription	Liver	Liver
7	chr10:97364400-97378600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr10:97364400-97378600	Strong transcription	Fetal Brain Female	brain
9	chr10:97364400-97378600	Strong transcription	Spleen	Spleen
10	chr10:97364400-97379000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr10:97364400-97403200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr10:97364600-97372800	Strong transcription	Duodenum Mucosa	Duodenum
13	chr10:97364600-97377400	Strong transcription	Placenta	Placenta
14	chr10:97364600-97378600	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr10:97364600-97378600	Strong transcription	Pancreas	Pancrea
16	chr10:97364600-97378800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr10:97364600-97378800	Strong transcription	NH-A	brain
18	chr10:97364600-97379000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr10:97364600-97379000	Strong transcription	GM12878-XiMat	blood
20	chr10:97364600-97388400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr10:97364800-97372200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr10:97364800-97372600	Strong transcription	HepG2	liver
23	chr10:97364800-97378600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr10:97364800-97378600	Strong transcription	Gastric	stomach
25	chr10:97364800-97378800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr10:97364800-97378800	Strong transcription	Muscle Satellite Cultured Cells	--
27	chr10:97364800-97378800	Strong transcription	Osteobl	bone
28	chr10:97364800-97379000	Strong transcription	Primary T helper cells PMA-I stimulated	--
29	chr10:97364800-97403400	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr10:97364800-97411000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr10:97365000-97372400	Strong transcription	Rectal Mucosa Donor 29	rectum
32	chr10:97365000-97372400	Strong transcription	Rectal Mucosa Donor 31	rectum
33	chr10:97365000-97373600	Strong transcription	Sigmoid Colon	Sigmoid Colon
34	chr10:97365000-97378200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr10:97365000-97378400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr10:97365000-97378600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr10:97365000-97378600	Strong transcription	Brain Germinal Matrix	brain
38	chr10:97365000-97378800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr10:97365000-97378800	Strong transcription	Adipose Nuclei	Adipose
40	chr10:97365000-97379000	Strong transcription	Dnd41	blood
41	chr10:97365000-97403000	Strong transcription	HUES6 Cell Line	embryonic stem cell
42	chr10:97365000-97403400	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chr10:97365200-97377800	Strong transcription	Placenta Amnion	Placenta Amnion
44	chr10:97365200-97378600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr10:97365200-97378800	Strong transcription	H1 Cell Line	embryonic stem cell
46	chr10:97365200-97378800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
47	chr10:97365200-97379000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr10:97365200-97379200	Strong transcription	HUES48 Cell Line	embryonic stem cell
49	chr10:97365200-97379200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr10:97365200-97379800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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