Variant report

Variant	rs7905711
Chromosome Location	chr10:97363344-97363345
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1053905	1.00[CHB][hapmap];0.82[CHD][hapmap];0.83[MEX][hapmap];0.85[ASN][1000 genomes]
rs10786226	0.85[ASN][1000 genomes]
rs10786227	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs10882637	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10882638	1.00[CHB][hapmap];0.82[CHD][hapmap];0.96[MEX][hapmap];0.85[ASN][1000 genomes]
rs10882640	1.00[CHB][hapmap];0.82[CHD][hapmap];0.96[MEX][hapmap];0.85[ASN][1000 genomes]
rs10882641	0.81[ASW][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];0.92[MEX][hapmap];0.85[ASN][1000 genomes]
rs10882642	0.85[ASN][1000 genomes]
rs10882643	0.85[CHB][hapmap]
rs10882644	0.85[CHB][hapmap]
rs10882649	0.85[CHB][hapmap]
rs10882654	1.00[CHB][hapmap]
rs11188397	1.00[CHB][hapmap];0.82[CHD][hapmap];0.83[MEX][hapmap]
rs11188398	0.85[CHB][hapmap];0.80[MEX][hapmap]
rs11188399	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs11188407	0.85[CHB][hapmap]
rs11188411	0.85[CHB][hapmap];0.80[MEX][hapmap]
rs11188417	0.85[CHB][hapmap]
rs11188444	0.82[CHB][hapmap]
rs11592809	1.00[LWK][hapmap]
rs11595248	1.00[LWK][hapmap];0.81[MKK][hapmap]
rs12767751	0.81[AMR][1000 genomes]
rs12778814	0.90[ASW][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];0.83[MEX][hapmap];0.85[ASN][1000 genomes]
rs12780161	0.85[ASN][1000 genomes]
rs1409709	1.00[CHB][hapmap];0.82[CHD][hapmap];0.96[MEX][hapmap];0.85[ASN][1000 genomes]
rs17461546	0.85[CHB][hapmap]
rs2275272	0.92[LWK][hapmap];0.81[MKK][hapmap]
rs2296689	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs2296691	0.85[CHB][hapmap]
rs2296692	1.00[CHB][hapmap];0.82[CHD][hapmap];0.83[MEX][hapmap];0.85[ASN][1000 genomes]
rs4037	0.85[CHB][hapmap];0.80[MEX][hapmap]
rs4258314	0.85[CHB][hapmap]
rs493193	1.00[LWK][hapmap];0.87[MEX][hapmap];0.82[YRI][hapmap]
rs500470	0.82[YRI][hapmap];0.86[AMR][1000 genomes]
rs524295	0.81[AMR][1000 genomes]
rs530773	0.86[AMR][1000 genomes]
rs533383	0.82[ASW][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.82[YRI][hapmap];0.86[AMR][1000 genomes]
rs568046	0.81[ASW][hapmap];1.00[LWK][hapmap];0.87[MEX][hapmap];0.82[YRI][hapmap];0.81[AMR][1000 genomes]
rs58419111	0.85[ASN][1000 genomes]
rs7099284	0.85[ASN][1000 genomes]
rs7100377	0.86[CHB][hapmap]
rs749050	0.85[CHB][hapmap]
rs943342	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs943343	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7905711	ANKRD2	cis	cerebellum	SCAN
rs7905711	HHEX	cis	cerebellum	SCAN

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97335200-97373400	Weak transcription	Psoas Muscle	Psoas
2	chr10:97359400-97364600	Weak transcription	Placenta	Placenta
3	chr10:97360000-97364000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr10:97360200-97364400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:97360200-97364600	Weak transcription	GM12878-XiMat	blood
6	chr10:97360400-97364400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr10:97360400-97364600	Enhancers	HepG2	liver
8	chr10:97360600-97364000	Weak transcription	Right Atrium	heart
9	chr10:97360800-97364400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr10:97360800-97364400	Weak transcription	Fetal Brain Female	brain
11	chr10:97360800-97364800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:97360800-97365000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr10:97360800-97365000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr10:97360800-97366200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr10:97361000-97363800	Weak transcription	Fetal Stomach	stomach
16	chr10:97361000-97364600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr10:97361000-97364600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr10:97361000-97364800	Weak transcription	Stomach Mucosa	stomach
19	chr10:97361000-97365000	Weak transcription	Adipose Nuclei	Adipose
20	chr10:97361000-97365000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr10:97361000-97365000	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr10:97361000-97365200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr10:97361000-97366000	Weak transcription	Hela-S3	cervix
24	chr10:97361000-97366400	Weak transcription	Brain Cingulate Gyrus	brain
25	chr10:97361000-97366800	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr10:97361000-97367600	Weak transcription	Fetal Kidney	kidney
27	chr10:97361000-97368200	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr10:97361000-97368400	Weak transcription	Brain Hippocampus Middle	brain
29	chr10:97361200-97364200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr10:97361200-97364800	Weak transcription	Brain Anterior Caudate	brain
31	chr10:97361400-97363800	Weak transcription	Colon Smooth Muscle	Colon
32	chr10:97361400-97364000	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr10:97361400-97364200	Weak transcription	Fetal Heart	heart
34	chr10:97361400-97364400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr10:97361400-97364400	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr10:97361400-97364400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr10:97361400-97364600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr10:97361400-97365200	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr10:97361400-97365800	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr10:97361400-97366600	Weak transcription	K562	blood
41	chr10:97361600-97364000	Weak transcription	Rectal Smooth Muscle	rectum
42	chr10:97361600-97364800	Weak transcription	Osteobl	bone
43	chr10:97361600-97365000	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr10:97361600-97367800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr10:97361800-97364800	Weak transcription	Thymus	Thymus
46	chr10:97361800-97369200	Weak transcription	Primary B cells from cord blood	blood
47	chr10:97362000-97364400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr10:97362000-97365200	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr10:97362200-97364000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr10:97362400-97364000	Weak transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links