Variant report

Variant	rs10882637
Chromosome Location	chr10:97360953-97360954
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:97189782..97190781-chr10:97360668..97361524,4	MCF-7	breast:
2	chr10:97239375..97239913-chr10:97360587..97361534,2	MCF-7	breast:
3	chr10:97149447..97150483-chr10:97360357..97361198,4	K562	blood:
4	chr10:97226590..97227155-chr10:97360952..97361496,2	K562	blood:
5	chr10:97134068..97135058-chr10:97360561..97361606,11	K562	blood:
6	chr10:97123140..97123749-chr10:97360764..97361314,2	K562	blood:
7	chr10:97189856..97190852-chr10:97360581..97361516,9	MCF-7	breast:
8	chr10:97149394..97150351-chr10:97360708..97361426,3	MCF-7	breast:
9	chr10:97122750..97123330-chr10:97360929..97361471,2	MCF-7	breast:
10	chr10:97189854..97191679-chr10:97360563..97361585,11	K562	blood:
11	chr10:97134082..97135344-chr10:97360078..97361554,17	MCF-7	breast:
12	chr10:97149803..97150837-chr10:97360594..97361494,3	MCF-7	breast:
13	chr10:97205315..97206214-chr10:97360559..97361486,6	MCF-7	breast:
14	chr10:97096077..97097107-chr10:97360732..97361499,3	K562	blood:
15	chr10:97205231..97206125-chr10:97360638..97361145,2	MCF-7	breast:

No data

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1053905	0.82[CHB][hapmap]
rs10786227	0.82[CHB][hapmap]
rs10882638	0.82[CHB][hapmap]
rs10882640	0.82[CHB][hapmap]
rs10882641	0.82[CHB][hapmap]
rs10882643	0.82[CHB][hapmap]
rs10882644	0.82[CHB][hapmap]
rs10882649	0.82[CHB][hapmap]
rs10882654	0.82[CHB][hapmap]
rs11188397	0.82[CHB][hapmap]
rs11188398	0.82[CHB][hapmap]
rs11188407	0.82[CHB][hapmap]
rs11188411	0.82[CHB][hapmap]
rs11188417	0.82[CHB][hapmap]
rs11188444	1.00[CHB][hapmap]
rs12767751	0.81[AMR][1000 genomes]
rs12778814	0.82[CHB][hapmap]
rs1409709	0.82[CHB][hapmap]
rs17461546	0.82[CHB][hapmap]
rs2296689	0.82[CHB][hapmap]
rs2296691	0.82[CHB][hapmap]
rs2296692	0.82[CHB][hapmap]
rs4037	0.82[CHB][hapmap]
rs4258314	0.82[CHB][hapmap]
rs500470	0.86[AMR][1000 genomes]
rs524295	0.81[AMR][1000 genomes]
rs530773	0.86[AMR][1000 genomes]
rs533383	0.86[AMR][1000 genomes]
rs568046	0.81[AMR][1000 genomes]
rs7100377	1.00[CHB][hapmap]
rs749050	0.82[CHB][hapmap]
rs7905711	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs943342	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97335200-97373400	Weak transcription	Psoas Muscle	Psoas
2	chr10:97359400-97364600	Weak transcription	Placenta	Placenta
3	chr10:97359800-97361000	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr10:97359800-97361400	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr10:97360000-97361200	Enhancers	Fetal Muscle Leg	muscle
6	chr10:97360000-97361600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr10:97360000-97364000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:97360200-97361400	Enhancers	Colon Smooth Muscle	Colon
9	chr10:97360200-97361600	Enhancers	Rectal Smooth Muscle	rectum
10	chr10:97360200-97364400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:97360200-97364600	Weak transcription	GM12878-XiMat	blood
12	chr10:97360400-97361200	Enhancers	Brain Anterior Caudate	brain
13	chr10:97360400-97361400	Enhancers	Fetal Heart	heart
14	chr10:97360400-97364400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:97360400-97364600	Enhancers	HepG2	liver
16	chr10:97360600-97361000	Enhancers	Fetal Kidney	kidney
17	chr10:97360600-97361000	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr10:97360600-97361000	Flanking Active TSS	Stomach Smooth Muscle	stomach
19	chr10:97360600-97361400	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr10:97360600-97361400	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr10:97360600-97361600	Enhancers	Fetal Intestine Small	intestine
22	chr10:97360600-97363200	Weak transcription	Right Ventricle	heart
23	chr10:97360600-97364000	Weak transcription	Right Atrium	heart
24	chr10:97360800-97361000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr10:97360800-97361000	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr10:97360800-97361000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr10:97360800-97361000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr10:97360800-97361000	Enhancers	Adipose Nuclei	Adipose
29	chr10:97360800-97361000	Enhancers	Brain Cingulate Gyrus	brain
30	chr10:97360800-97361000	Enhancers	Brain Hippocampus Middle	brain
31	chr10:97360800-97361000	Enhancers	Brain Inferior Temporal Lobe	brain
32	chr10:97360800-97361000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr10:97360800-97361000	Enhancers	Fetal Stomach	stomach
34	chr10:97360800-97361000	Enhancers	Stomach Mucosa	stomach
35	chr10:97360800-97361000	Enhancers	Hela-S3	cervix
36	chr10:97360800-97361400	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr10:97360800-97361400	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr10:97360800-97361400	Enhancers	HSMMtube	muscle
39	chr10:97360800-97361400	Enhancers	K562	blood
40	chr10:97360800-97362600	Enhancers	Fetal Intestine Large	intestine
41	chr10:97360800-97364400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr10:97360800-97364400	Weak transcription	Fetal Brain Female	brain
43	chr10:97360800-97364800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr10:97360800-97365000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr10:97360800-97365000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr10:97360800-97366200	Weak transcription	Duodenum Smooth Muscle	Duodenum

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