Variant report

Variant	rs493193
Chromosome Location	chr10:97339438-97339439
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97321132..97322858-chr10:97338757..97340666,2	K562	blood:

Variant related genes	Relation type
ENSG00000095637	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1078641	1.00[CHB][hapmap]
rs10882638	0.83[MEX][hapmap]
rs10882640	0.83[MEX][hapmap]
rs11592809	1.00[LWK][hapmap]
rs11595248	1.00[LWK][hapmap]
rs1270505	0.95[CHB][hapmap]
rs12767387	0.83[ASN][1000 genomes]
rs12767751	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12768725	0.84[ASN][1000 genomes]
rs1409709	0.83[MEX][hapmap]
rs1409710	1.00[YRI][hapmap]
rs2275272	0.92[LWK][hapmap]
rs500470	0.95[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs524295	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs525807	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs526928	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs527043	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs530773	0.90[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs533383	0.92[ASW][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.95[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs568046	0.91[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];0.87[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7070798	1.00[CHB][hapmap]
rs7086071	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs7918947	0.95[CHB][hapmap];0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97334800-97339600	Weak transcription	Left Ventricle	heart
2	chr10:97335200-97373400	Weak transcription	Psoas Muscle	Psoas
3	chr10:97335600-97340800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr10:97338400-97339600	Enhancers	HSMMtube	muscle
5	chr10:97338600-97339600	Enhancers	Placenta	Placenta
6	chr10:97338600-97339800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr10:97338800-97340200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr10:97339000-97340200	Enhancers	Aorta	Aorta
9	chr10:97339400-97340200	Enhancers	Right Atrium	heart

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