Variant report

Variant	rs1409710
Chromosome Location	chr10:97372669-97372670
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11592789	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[EUR][1000 genomes]
rs11592809	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11593038	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11593693	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11594687	0.81[EUR][1000 genomes]
rs11595122	1.00[CEU][hapmap]
rs11595248	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11598540	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12354465	1.00[CHB][hapmap]
rs12357513	1.00[CHB][hapmap]
rs12359410	1.00[CHB][hapmap]
rs12761112	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12761960	1.00[CEU][hapmap]
rs12763743	0.81[EUR][1000 genomes]
rs12765494	0.88[EUR][1000 genomes]
rs12767650	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12770313	1.00[CEU][hapmap]
rs12770849	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12774334	0.84[AMR][1000 genomes]
rs12775780	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12779833	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12780375	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12781327	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12782273	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2275272	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2296690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3176886	0.84[EUR][1000 genomes]
rs3176888	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34296389	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34332904	0.87[EUR][1000 genomes]
rs34460407	0.81[EUR][1000 genomes]
rs34533159	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34832675	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34847853	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35700869	1.00[CEU][hapmap]
rs35712039	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3765571	1.00[ASN][1000 genomes]
rs3793746	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs3793751	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs493193	1.00[YRI][hapmap]
rs500470	1.00[YRI][hapmap]
rs530773	1.00[YRI][hapmap]
rs533383	1.00[YRI][hapmap]
rs568046	1.00[YRI][hapmap]
rs57670810	0.89[EUR][1000 genomes]
rs67857430	0.81[EUR][1000 genomes]
rs7073937	1.00[CHB][hapmap]
rs71482367	0.85[EUR][1000 genomes]
rs71482376	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs71482377	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs71482378	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97335200-97373400	Weak transcription	Psoas Muscle	Psoas
2	chr10:97364000-97382000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr10:97364000-97409200	Strong transcription	Primary T cells from cord blood	blood
4	chr10:97364000-97411000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr10:97364400-97373200	Strong transcription	Liver	Liver
6	chr10:97364400-97378600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr10:97364400-97378600	Strong transcription	Fetal Brain Female	brain
8	chr10:97364400-97378600	Strong transcription	Spleen	Spleen
9	chr10:97364400-97379000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr10:97364400-97403200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:97364600-97372800	Strong transcription	Duodenum Mucosa	Duodenum
12	chr10:97364600-97377400	Strong transcription	Placenta	Placenta
13	chr10:97364600-97378600	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr10:97364600-97378600	Strong transcription	Pancreas	Pancrea
15	chr10:97364600-97378800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr10:97364600-97378800	Strong transcription	NH-A	brain
17	chr10:97364600-97379000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr10:97364600-97379000	Strong transcription	GM12878-XiMat	blood
19	chr10:97364600-97388400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:97364800-97378600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr10:97364800-97378600	Strong transcription	Gastric	stomach
22	chr10:97364800-97378800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr10:97364800-97378800	Strong transcription	Muscle Satellite Cultured Cells	--
24	chr10:97364800-97378800	Strong transcription	Osteobl	bone
25	chr10:97364800-97379000	Strong transcription	Primary T helper cells PMA-I stimulated	--
26	chr10:97364800-97403400	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr10:97364800-97411000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr10:97365000-97373600	Strong transcription	Sigmoid Colon	Sigmoid Colon
29	chr10:97365000-97378200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr10:97365000-97378400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr10:97365000-97378600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr10:97365000-97378600	Strong transcription	Brain Germinal Matrix	brain
33	chr10:97365000-97378800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr10:97365000-97378800	Strong transcription	Adipose Nuclei	Adipose
35	chr10:97365000-97379000	Strong transcription	Dnd41	blood
36	chr10:97365000-97403000	Strong transcription	HUES6 Cell Line	embryonic stem cell
37	chr10:97365000-97403400	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr10:97365200-97377800	Strong transcription	Placenta Amnion	Placenta Amnion
39	chr10:97365200-97378600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr10:97365200-97378800	Strong transcription	H1 Cell Line	embryonic stem cell
41	chr10:97365200-97378800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
42	chr10:97365200-97379000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr10:97365200-97379200	Strong transcription	HUES48 Cell Line	embryonic stem cell
44	chr10:97365200-97379200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr10:97365200-97379800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr10:97365200-97382200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
47	chr10:97365400-97376000	Strong transcription	Fetal Thymus	thymus
48	chr10:97365400-97377000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr10:97365400-97378600	Strong transcription	Lung	lung
50	chr10:97365400-97378800	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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