Variant report

Variant	rs11594687
Chromosome Location	chr10:97338531-97338532
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11592789	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11592809	0.81[EUR][1000 genomes]
rs11593693	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11594340	0.89[AMR][1000 genomes]
rs11595122	0.93[AMR][1000 genomes]
rs12761112	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12761960	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12765494	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12770313	0.93[AMR][1000 genomes]
rs12781327	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1409710	0.81[EUR][1000 genomes]
rs2275272	0.81[EUR][1000 genomes]
rs2296690	0.81[EUR][1000 genomes]
rs34332904	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34460407	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34533159	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34772783	0.88[EUR][1000 genomes]
rs34808745	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs34836127	0.89[AMR][1000 genomes]
rs34847853	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35051706	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs35700869	0.93[AMR][1000 genomes]
rs35822210	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35987262	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs3793751	0.81[EUR][1000 genomes]
rs57670810	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs67783179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs67857430	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs68078796	0.89[AMR][1000 genomes]
rs71482367	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs71482374	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97334800-97339400	Weak transcription	Right Atrium	heart
2	chr10:97334800-97339600	Weak transcription	Left Ventricle	heart
3	chr10:97335000-97339000	Weak transcription	Aorta	Aorta
4	chr10:97335200-97373400	Weak transcription	Psoas Muscle	Psoas
5	chr10:97335600-97340800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr10:97338400-97339600	Enhancers	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links