Variant report

Variant	rs35822210
Chromosome Location	chr10:97364456-97364457
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11592789	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11593693	0.85[EUR][1000 genomes]
rs11594340	0.83[AMR][1000 genomes]
rs11594687	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11595122	0.86[AMR][1000 genomes]
rs12761112	0.86[EUR][1000 genomes]
rs12761960	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs12765494	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12770313	0.86[AMR][1000 genomes]
rs12781327	0.84[EUR][1000 genomes]
rs2275272	0.80[EUR][1000 genomes]
rs34332904	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34460407	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34533159	0.85[EUR][1000 genomes]
rs34772783	0.85[EUR][1000 genomes]
rs34808745	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs34836127	0.83[AMR][1000 genomes]
rs34847853	0.85[EUR][1000 genomes]
rs35051706	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs35700869	0.86[AMR][1000 genomes]
rs35987262	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs3793751	0.80[EUR][1000 genomes]
rs57670810	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67783179	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67857430	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs68078796	0.83[AMR][1000 genomes]
rs71482367	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71482374	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97335200-97373400	Weak transcription	Psoas Muscle	Psoas
2	chr10:97359400-97364600	Weak transcription	Placenta	Placenta
3	chr10:97360200-97364600	Weak transcription	GM12878-XiMat	blood
4	chr10:97360400-97364600	Enhancers	HepG2	liver
5	chr10:97360800-97364800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:97360800-97365000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr10:97360800-97365000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:97360800-97366200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr10:97361000-97364600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr10:97361000-97364600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr10:97361000-97364800	Weak transcription	Stomach Mucosa	stomach
12	chr10:97361000-97365000	Weak transcription	Adipose Nuclei	Adipose
13	chr10:97361000-97365000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr10:97361000-97365000	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr10:97361000-97365200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr10:97361000-97366000	Weak transcription	Hela-S3	cervix
17	chr10:97361000-97366400	Weak transcription	Brain Cingulate Gyrus	brain
18	chr10:97361000-97366800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr10:97361000-97367600	Weak transcription	Fetal Kidney	kidney
20	chr10:97361000-97368200	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr10:97361000-97368400	Weak transcription	Brain Hippocampus Middle	brain
22	chr10:97361200-97364800	Weak transcription	Brain Anterior Caudate	brain
23	chr10:97361400-97364600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr10:97361400-97365200	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr10:97361400-97365800	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr10:97361400-97366600	Weak transcription	K562	blood
27	chr10:97361600-97364800	Weak transcription	Osteobl	bone
28	chr10:97361600-97365000	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr10:97361600-97367800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr10:97361800-97364800	Weak transcription	Thymus	Thymus
31	chr10:97361800-97369200	Weak transcription	Primary B cells from cord blood	blood
32	chr10:97362000-97365200	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr10:97362400-97364600	Enhancers	Stomach Smooth Muscle	stomach
34	chr10:97362400-97364600	Weak transcription	NH-A	brain
35	chr10:97362400-97364800	Weak transcription	NHLF	lung
36	chr10:97362400-97365000	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr10:97362400-97365200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr10:97362400-97365400	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr10:97362600-97364800	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr10:97362600-97365200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr10:97362600-97365200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr10:97362600-97365400	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr10:97362800-97364600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr10:97362800-97364600	Weak transcription	Duodenum Mucosa	Duodenum
45	chr10:97362800-97364800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr10:97362800-97364800	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr10:97363000-97364600	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr10:97363000-97364600	Weak transcription	Pancreas	Pancrea
49	chr10:97363000-97364800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr10:97363000-97364800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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