Variant report

Variant	rs11594340
Chromosome Location	chr10:97570374-97570375
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11592789	0.89[AMR][1000 genomes]
rs11592937	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11594010	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11594687	0.89[AMR][1000 genomes]
rs11594853	1.00[AFR][1000 genomes]
rs11595122	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11596697	0.88[AFR][1000 genomes]
rs11597564	1.00[AFR][1000 genomes]
rs11599779	1.00[AFR][1000 genomes]
rs12761960	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12763743	0.88[EUR][1000 genomes]
rs12765494	0.86[AMR][1000 genomes]
rs12767650	0.87[EUR][1000 genomes]
rs12770313	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12770849	0.89[EUR][1000 genomes]
rs12774334	0.90[EUR][1000 genomes]
rs12780375	0.89[EUR][1000 genomes]
rs12782273	0.88[EUR][1000 genomes]
rs3176886	0.87[EUR][1000 genomes]
rs3176888	0.89[EUR][1000 genomes]
rs3181115	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34296389	0.91[EUR][1000 genomes]
rs34332904	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34630379	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34808745	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34833309	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34836127	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34955155	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34963139	1.00[AFR][1000 genomes]
rs35051706	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35691144	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35700869	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35822210	0.83[AMR][1000 genomes]
rs35968758	1.00[AFR][1000 genomes]
rs35987262	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs36103691	1.00[AFR][1000 genomes]
rs57670810	0.89[AMR][1000 genomes]
rs66527979	1.00[AFR][1000 genomes]
rs66706740	1.00[AFR][1000 genomes]
rs66751616	0.94[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs67783179	0.89[AMR][1000 genomes]
rs67857430	0.89[AMR][1000 genomes]
rs68078796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71482374	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71482376	0.89[EUR][1000 genomes]
rs71482377	0.89[EUR][1000 genomes]
rs71482378	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv895905	chr10:97513362-97686064	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv895906	chr10:97513362-97703650	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv895907	chr10:97529318-97686064	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv895908	chr10:97544513-97724247	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97553000-97576200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:97558800-97570600	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr10:97567200-97573200	Weak transcription	Spleen	Spleen
4	chr10:97567200-97573800	Weak transcription	Primary B cells from cord blood	blood
5	chr10:97567400-97573600	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr10:97569200-97572000	Weak transcription	HepG2	liver
7	chr10:97569600-97570400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:97569800-97570400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:97569800-97571200	ZNF genes & repeats	GM12878-XiMat	blood
10	chr10:97569800-97572000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr10:97570000-97570800	Enhancers	Primary B cells from peripheral blood	blood
12	chr10:97570200-97570600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr10:97570200-97571000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr10:97570200-97571800	Strong transcription	Primary monocytes fromperipheralblood	blood

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